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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9725 and 9726 are separated by 198 nucleotides
9726 and 9727 are separated by 1009 nucleotides
9727 and 9728 are separated by 319 nucleotides
9728 and 9729 are separated by 613 nucleotides
mRNA_1357: 9725 - BLAST ATP-citrate synthase [Microbotryum lychnidis-dioicae ..., at 79,515 to 80,146
9725
mRNA_1358: 9726 - K01648 ACLY ATP citrate (pro-S)-lyase, at 80,345 to 84,761
9726
mRNA_1359: 9727 - K06018 PPN1 endopolyphosphatase, at 85,771 to 88,302
9727
mRNA_1360: 9728 - K01054 MGLL acylglycerol lipase, at 88,622 to 90,157
9728
mRNA_1361: 9729 - Hypothetical Protein, at 90,771 to 91,579
9729
Group
Condition
mRNA
_1357
mRNA
_1358
mRNA
_1359
mRNA
_1360
mRNA
_1361
9725
9726
9727
9728
9729
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
N.D.
-0.9
-0.2
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
N.D.
-0.5
+0.2
-0.7
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
N.D.
-1.3
+0.0
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.3
N.D.
-0.6
-0.1
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
N.D.
-1.4
-0.3
+0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
N.D.
-1.0
-0.4
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
N.D.
-0.0
-0.8
-0.0
ypd buoyancy
40 hrs High Buoyancy
+0.1
N.D.
-0.4
-0.1
-0.2
growth on oleic acid
YNB Oleic Acid
+0.4
N.D.
-0.2
-0.6
-0.2
auxotrophy
Dropout Complete
-0.2
N.D.
-0.9
-0.1
+0.7
auxotrophy
YNB Glucose 75mM Methionine
+0.0
N.D.
-0.9
+0.0
+0.5
growth on ricinoleic acid
YNB Glucose
-0.1
N.D.
-0.4
-0.1
+0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.1
N.D.
-0.5
-0.1
+0.5
ypd buoyancy
40 hrs Median Buoyancy
+0.1
N.D.
-0.4
+0.2
-0.2
growth on oleic acid
YNB Glucose
+0.4
N.D.
-0.3
-0.1
-0.2
growth on ypd
YPD
+0.1
N.D.
-0.2
+0.2
-0.2
auxotrophy
YNB Glucose
-0.2
N.D.
-0.5
+0.0
+0.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
N.D.
+0.3
-0.0
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
N.D.
+0.1
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.5
N.D.
+1.1
+0.7
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
N.D.
+0.5
+0.3
+0.4
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