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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9727 and 9728 are separated by 319 nucleotides
9728 and 9729 are separated by 613 nucleotides
9729 and 9730 are separated by 935 nucleotides
9730 and 9731 are separated by 3250 nucleotides
mRNA_1359: 9727 - K06018 PPN1 endopolyphosphatase, at 85,771 to 88,302
9727
mRNA_1360: 9728 - K01054 MGLL acylglycerol lipase, at 88,622 to 90,157
9728
mRNA_1361: 9729 - Hypothetical Protein, at 90,771 to 91,579
9729
mRNA_1362: 9730 - K00507 SCD, desC stearoyl-CoA desaturase (Delta-9 desaturase), at 92,515 to 94,818
9730
mRNA_1363: 9731 - K11147 DHRS4 dehydrogenase/reductase SDR family member 4, at 98,069 to 99,768
9731
Group
Condition
mRNA
_1359
mRNA
_1360
mRNA
_1361
mRNA
_1362
mRNA
_1363
9727
9728
9729
9730
9731
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.9
-0.2
-0.3
N.D.
+0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.6
-0.1
-0.1
N.D.
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
+0.2
-0.7
N.D.
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-1.3
+0.0
+0.1
N.D.
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.4
-0.1
-0.2
N.D.
-0.2
growth on oleic acid
YNB Oleic Acid
-0.2
-0.6
-0.2
N.D.
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
-0.8
-0.0
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-1.0
-0.4
+0.2
N.D.
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-1.4
-0.3
+0.6
N.D.
+0.4
ypd buoyancy
40 hrs Median Buoyancy
-0.4
+0.2
-0.2
N.D.
+0.1
growth on oleic acid
YNB Glucose
-0.3
-0.1
-0.2
N.D.
+0.4
growth on ypd
YPD
-0.2
+0.2
-0.2
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.9
+0.0
+0.5
N.D.
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.1
-0.1
N.D.
-0.3
growth on ricinoleic acid
YNB Glucose
-0.4
-0.1
+0.2
N.D.
+0.1
auxotrophy
Dropout Complete
-0.9
-0.1
+0.7
N.D.
+0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.5
-0.1
+0.5
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
-0.0
-0.0
N.D.
+0.1
auxotrophy
YNB Glucose
-0.5
+0.0
+0.7
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.5
+0.3
+0.4
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+1.1
+0.7
+0.2
N.D.
+0.5
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