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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9729 and 9730 are separated by 935 nucleotides
9730 and 9731 are separated by 3250 nucleotides
9731 and 9732 are separated by 779 nucleotides
9732 and 9733 are separated by 1076 nucleotides
mRNA_1361: 9729 - Hypothetical Protein, at 90,771 to 91,579
9729
mRNA_1362: 9730 - K00507 SCD, desC stearoyl-CoA desaturase (Delta-9 desaturase), at 92,515 to 94,818
9730
mRNA_1363: 9731 - K11147 DHRS4 dehydrogenase/reductase SDR family member 4, at 98,069 to 99,768
9731
mRNA_1364: 9732 - SUPERFAMILY--SSF48452, at 100,548 to 102,445
9732
mRNA_1365: 9733 - K17260 ACTR2, ARP2 actin-related protein 2, at 103,522 to 105,237
9733
Group
Condition
mRNA
_1361
mRNA
_1362
mRNA
_1363
mRNA
_1364
mRNA
_1365
9729
9730
9731
9732
9733
ypd buoyancy
40 hrs No Buoyancy Separation
-0.7
N.D.
-0.1
-0.7
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.2
N.D.
-0.2
-0.3
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.1
N.D.
-0.3
-0.3
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
N.D.
+0.0
-0.4
N.D.
growth on ypd
YPD
-0.2
N.D.
-0.1
-0.1
N.D.
growth on oleic acid
YNB Oleic Acid
-0.2
N.D.
+0.1
-0.2
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.2
N.D.
+0.1
-0.1
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
N.D.
-0.3
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
N.D.
+0.1
-0.3
N.D.
growth on oleic acid
YNB Glucose
-0.2
N.D.
+0.4
+0.0
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
N.D.
+0.0
+0.4
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
N.D.
+0.3
-0.2
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
N.D.
+0.1
+0.3
N.D.
growth on ricinoleic acid
YNB Glucose
+0.2
N.D.
+0.1
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
N.D.
+0.3
-0.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.6
N.D.
+0.4
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
N.D.
+0.5
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.5
N.D.
+0.1
+0.2
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.5
N.D.
+0.2
+0.3
N.D.
auxotrophy
Dropout Complete
+0.7
N.D.
+0.3
+0.1
N.D.
auxotrophy
YNB Glucose
+0.7
N.D.
+0.4
+0.3
N.D.
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