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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9734 and 9735 are separated by 351 nucleotides
9735 and 9736 are separated by 281 nucleotides
9736 and 9737 are separated by 176 nucleotides
9737 and 9738 are separated by 253 nucleotides
mRNA_1366: 9734 - K00661 maa maltose O-acetyltransferase, at 105,397 to 106,460
9734
mRNA_1367: 9735 - K03233 EEF1G elongation factor 1-gamma, at 106,812 to 108,790
9735
mRNA_1368: 9736 - K03233 EEF1G elongation factor 1-gamma, at 109,072 to 110,968
9736
mRNA_1369: 9737 - HMMPfam-Glutathione S-transferase, N-terminal domain-PF13417,ProSiteProfiles-Soluble glutathione S-transferase N-terminal domain profile.-PS50404,ProSiteProfiles-Soluble glutathione S-transferase C-terminal domain profile.-PS50405,SUPERFAMILY--SSF52833, at 111,145 to 112,135
9737
mRNA_1370: 9738 - HMMPfam-NmrA-like family-PF05368,SUPERFAMILY--SSF51735, at 112,389 to 113,571
9738
Group
Condition
mRNA
_1366
mRNA
_1367
mRNA
_1368
mRNA
_1369
mRNA
_1370
9734
9735
9736
9737
9738
growth on oleic acid
YNB Oleic Acid
-0.1
+0.2
-0.1
-1.0
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
-0.3
-0.1
+0.1
-0.1
growth on oleic acid
YNB Glucose
-0.0
+0.4
-0.0
-1.0
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.4
-0.0
-0.5
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.1
+0.1
-0.6
-0.1
auxotrophy
Dropout Complete
-0.1
-0.6
+0.2
-0.2
+0.1
auxotrophy
YNB Glucose
-0.2
-0.3
+0.3
-0.4
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
-0.1
+0.0
-0.3
-0.1
growth on ypd
YPD
+0.1
-0.2
+0.3
-0.5
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
+0.0
-0.3
-0.2
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.2
+0.3
-0.5
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.0
+0.3
-0.2
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
-0.1
+0.0
+0.2
-0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.3
+0.2
+0.1
+0.4
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.3
-0.0
+0.5
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.5
+0.5
+0.3
-0.4
-0.0
growth on ricinoleic acid
YNB Glucose
+1.1
+0.3
+0.5
-0.8
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
+0.4
+0.3
+0.8
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.7
+0.2
+0.6
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.9
+0.4
-0.5
+0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.6
+1.2
+0.8
-0.8
+0.6
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