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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9737 and 9738 are separated by 253 nucleotides
9738 and 9739 are separated by 486 nucleotides
9739 and 9740 are separated by 334 nucleotides
9740 and 9741 are separated by 414 nucleotides
mRNA_1369: 9737 - HMMPfam-Glutathione S-transferase, N-terminal domain-PF13417,ProSiteProfiles-Soluble glutathione S-transferase N-terminal domain profile.-PS50404,ProSiteProfiles-Soluble glutathione S-transferase C-terminal domain profile.-PS50405,SUPERFAMILY--SSF52833, at 111,145 to 112,135
9737
mRNA_1370: 9738 - HMMPfam-NmrA-like family-PF05368,SUPERFAMILY--SSF51735, at 112,389 to 113,571
9738
mRNA_1371: 9739 - KOG3024 Uncharacterized conserved protein, at 114,058 to 115,447
9739
mRNA_1372: 9740 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 115,782 to 116,339
9740
mRNA_1373: 9741 - K05661 ABCB6 ATP-binding cassette, subfamily B (MDR/TAP), member 6, at 116,754 to 120,065
9741
Group
Condition
mRNA
_1369
mRNA
_1370
mRNA
_1371
mRNA
_1372
mRNA
_1373
9737
9738
9739
9740
9741
growth on oleic acid
YNB Glucose
-1.0
+0.0
-1.1
+0.1
-0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.6
-0.1
-1.4
+0.4
-0.1
auxotrophy
YNB Glucose
-0.4
+0.1
-1.7
+0.5
+0.0
growth on oleic acid
YNB Oleic Acid
-1.0
-0.0
-0.1
-0.3
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.5
+0.2
-0.7
+0.0
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
-0.1
-0.5
-0.2
-0.2
growth on ricinoleic acid
YNB Glucose
-0.8
+0.3
-1.0
+0.2
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
-0.0
+0.1
-0.5
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
+0.6
-1.3
+0.4
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.0
-1.3
+0.6
-0.0
auxotrophy
Dropout Complete
-0.2
+0.1
-0.8
+0.3
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.8
+0.1
-1.6
-0.0
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.5
+0.1
-0.5
+0.5
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.3
-0.5
-0.1
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.1
-0.4
-0.1
+0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.4
+0.1
-0.8
+0.1
+0.1
growth on ypd
YPD
-0.5
+0.2
+0.4
-0.4
+0.3
ypd buoyancy
40 hrs High Buoyancy
+0.6
-0.1
-0.6
-0.1
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.5
+0.1
-0.0
-0.1
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.0
+0.2
+0.2
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.8
+0.6
-0.2
+0.7
+0.2
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