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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9738 and 9739 are separated by 486 nucleotides
9739 and 9740 are separated by 334 nucleotides
9740 and 9741 are separated by 414 nucleotides
9741 and 9742 are separated by 1053 nucleotides
mRNA_1370: 9738 - HMMPfam-NmrA-like family-PF05368,SUPERFAMILY--SSF51735, at 112,389 to 113,571
9738
mRNA_1371: 9739 - KOG3024 Uncharacterized conserved protein, at 114,058 to 115,447
9739
mRNA_1372: 9740 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 115,782 to 116,339
9740
mRNA_1373: 9741 - K05661 ABCB6 ATP-binding cassette, subfamily B (MDR/TAP), member 6, at 116,754 to 120,065
9741
mRNA_1374: 9742 - K01733 thrC threonine synthase, at 121,119 to 123,367
9742
Group
Condition
mRNA
_1370
mRNA
_1371
mRNA
_1372
mRNA
_1373
mRNA
_1374
9738
9739
9740
9741
9742
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-1.6
-0.0
+0.2
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-1.4
+0.4
-0.1
N.D.
auxotrophy
YNB Glucose
+0.1
-1.7
+0.5
+0.0
N.D.
growth on oleic acid
YNB Glucose
+0.0
-1.1
+0.1
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.5
-0.2
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.7
+0.0
-0.3
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.6
-0.1
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.0
-1.3
+0.6
-0.0
N.D.
auxotrophy
Dropout Complete
+0.1
-0.8
+0.3
-0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.8
+0.1
+0.1
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
+0.1
-0.5
-0.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.4
-0.1
+0.0
N.D.
growth on oleic acid
YNB Oleic Acid
-0.0
-0.1
-0.3
-0.1
N.D.
growth on ricinoleic acid
YNB Glucose
+0.3
-1.0
+0.2
+0.0
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.6
-1.3
+0.4
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.5
-0.1
+0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.0
-0.1
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.5
+0.5
-0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
+0.2
+0.2
-0.1
N.D.
growth on ypd
YPD
+0.2
+0.4
-0.4
+0.3
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.6
-0.2
+0.7
+0.2
N.D.
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