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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9741 and 9742 are separated by 1053 nucleotides
9742 and 9743 are separated by 610 nucleotides
9743 and 9744 are separated by 329 nucleotides
9744 and 9745 are separated by 377 nucleotides
mRNA_1373: 9741 - K05661 ABCB6 ATP-binding cassette, subfamily B (MDR/TAP), member 6, at 116,754 to 120,065
9741
mRNA_1374: 9742 - K01733 thrC threonine synthase, at 121,119 to 123,367
9742
mRNA_1375: 9743 - K08139 HXT MFS transporter, SP family, sugar-H+ symporter, at 123,978 to 126,769
9743
mRNA_1376: 9744 - HMMPfam-Helix-loop-helix DNA-binding domain-PF00010,ProSiteProfiles-Myc-type, basic helix-loop-helix (bHLH) domain profile.-PS50888,SUPERFAMILY--SSF47459, at 127,099 to 128,886
9744
mRNA_1377: 9745 - Hypothetical Protein, at 129,264 to 129,958
9745
Group
Condition
mRNA
_1373
mRNA
_1374
mRNA
_1375
mRNA
_1376
mRNA
_1377
9741
9742
9743
9744
9745
growth on oleic acid
YNB Oleic Acid
-0.1
N.D.
-0.3
-1.2
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
N.D.
-0.2
-1.2
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
N.D.
-0.2
-0.2
-0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
N.D.
-0.2
-0.2
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.1
N.D.
+0.1
-0.2
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
N.D.
-0.1
-0.0
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
N.D.
+0.0
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
N.D.
+0.1
-0.2
-0.1
auxotrophy
YNB Glucose
+0.0
N.D.
+0.0
+0.1
-0.3
growth on oleic acid
YNB Glucose
-0.0
N.D.
-0.2
-0.1
+0.3
ypd buoyancy
40 hrs High Buoyancy
+0.1
N.D.
-0.1
+0.1
-0.1
auxotrophy
Dropout Complete
-0.1
N.D.
+0.0
+0.3
-0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.1
N.D.
+0.1
-0.3
+0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.0
N.D.
+0.2
+0.0
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
N.D.
-0.3
-0.5
+0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
N.D.
+0.4
-0.0
-0.0
growth on ricinoleic acid
YNB Glucose
+0.0
N.D.
+0.2
+0.0
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
N.D.
+0.2
+0.5
-0.5
ypd buoyancy
40 hrs Median Buoyancy
+0.1
N.D.
-0.0
+0.1
+0.1
growth on ypd
YPD
+0.3
N.D.
+0.2
+0.1
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
N.D.
+0.4
+0.0
+0.2
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