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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9743 and 9744 are separated by 329 nucleotides
9744 and 9745 are separated by 377 nucleotides
9745 and 9746 are separated by 410 nucleotides
9746 and 9747 are separated by 112 nucleotides
mRNA_1375: 9743 - K08139 HXT MFS transporter, SP family, sugar-H+ symporter, at 123,978 to 126,769
9743
mRNA_1376: 9744 - HMMPfam-Helix-loop-helix DNA-binding domain-PF00010,ProSiteProfiles-Myc-type, basic helix-loop-helix (bHLH) domain profile.-PS50888,SUPERFAMILY--SSF47459, at 127,099 to 128,886
9744
mRNA_1377: 9745 - Hypothetical Protein, at 129,264 to 129,958
9745
mRNA_1378: 9746 - KOG2214 Predicted esterase of the alpha-beta hydrolase superfamily, at 130,369 to 133,964
9746
mRNA_1379: 9747 - HMMPfam-Ubiquitin-2 like Rad60 SUMO-like-PF11976,SUPERFAMILY--SSF54236, at 134,077 to 136,225
9747
Group
Condition
mRNA
_1375
mRNA
_1376
mRNA
_1377
mRNA
_1378
mRNA
_1379
9743
9744
9745
9746
9747
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-1.2
+0.1
-0.0
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.2
-0.5
-0.2
-0.1
growth on oleic acid
YNB Oleic Acid
-0.3
-1.2
+0.2
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.2
-0.1
-0.0
-0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.2
-0.3
+0.1
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.0
-0.0
-0.6
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.2
-0.1
+0.1
-0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.3
+0.3
-0.2
+0.0
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.1
-0.1
-0.1
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
+0.5
-0.5
+0.2
-0.4
auxotrophy
YNB Glucose
+0.0
+0.1
-0.3
+0.1
-0.0
growth on oleic acid
YNB Glucose
-0.2
-0.1
+0.3
+0.0
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.0
-0.1
+0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.1
+0.1
-0.2
+0.2
growth on ypd
YPD
+0.2
+0.1
-0.0
+0.0
-0.0
auxotrophy
Dropout Complete
+0.0
+0.3
-0.3
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
-0.1
+0.1
+0.2
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
-0.5
+0.6
-0.0
+0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
-0.0
-0.0
+0.0
+0.2
growth on ricinoleic acid
YNB Glucose
+0.2
+0.0
-0.0
+0.4
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
+0.0
+0.2
+0.3
-0.1
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