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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9744 and 9745 are separated by 377 nucleotides
9745 and 9746 are separated by 410 nucleotides
9746 and 9747 are separated by 112 nucleotides
9747 and 9748 are separated by 602 nucleotides
mRNA_1376: 9744 - HMMPfam-Helix-loop-helix DNA-binding domain-PF00010,ProSiteProfiles-Myc-type, basic helix-loop-helix (bHLH) domain profile.-PS50888,SUPERFAMILY--SSF47459, at 127,099 to 128,886
9744
mRNA_1377: 9745 - Hypothetical Protein, at 129,264 to 129,958
9745
mRNA_1378: 9746 - KOG2214 Predicted esterase of the alpha-beta hydrolase superfamily, at 130,369 to 133,964
9746
mRNA_1379: 9747 - HMMPfam-Ubiquitin-2 like Rad60 SUMO-like-PF11976,SUPERFAMILY--SSF54236, at 134,077 to 136,225
9747
mRNA_1380: 9748 - K02155 ATPeV0C, ATP6L V-type H+-transporting ATPase 16kDa proteolipid subunit, at 136,828 to 138,135
9748
Group
Condition
mRNA
_1376
mRNA
_1377
mRNA
_1378
mRNA
_1379
mRNA
_1380
9744
9745
9746
9747
9748
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.2
+0.1
-0.0
-0.4
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.5
-0.2
-0.1
N.D.
growth on oleic acid
YNB Oleic Acid
-1.2
+0.2
+0.2
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.1
-0.0
-0.3
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.3
+0.1
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.1
+0.1
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
-0.0
-0.6
+0.2
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.5
-0.5
+0.2
-0.4
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.3
+0.3
-0.2
+0.0
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.0
-0.1
+0.1
-0.1
N.D.
auxotrophy
YNB Glucose
+0.1
-0.3
+0.1
-0.0
N.D.
growth on ypd
YPD
+0.1
-0.0
+0.0
-0.0
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.1
-0.1
+0.2
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
-0.0
+0.0
+0.2
N.D.
auxotrophy
Dropout Complete
+0.3
-0.3
+0.2
-0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.1
-0.2
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.1
+0.2
+0.1
N.D.
growth on oleic acid
YNB Glucose
-0.1
+0.3
+0.0
+0.1
N.D.
growth on ricinoleic acid
YNB Glucose
+0.0
-0.0
+0.4
-0.0
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
+0.2
+0.3
-0.1
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
+0.6
-0.0
+0.5
N.D.
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