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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9748 and 9749 are separated by 172 nucleotides
9749 and 9750 are separated by 194 nucleotides
9750 and 9751 are separated by 442 nucleotides
9751 and 9752 are separated by 185 nucleotides
mRNA_1380: 9748 - K02155 ATPeV0C, ATP6L V-type H+-transporting ATPase 16kDa proteolipid subunit, at 136,828 to 138,135
9748
mRNA_1381: 9749 - Hypothetical Protein, at 138,308 to 139,656
9749
mRNA_1382: 9750 - K11805 WDR68, HAN11 WD repeat-containing protein 68, at 139,851 to 141,572
9750
mRNA_1383: 9751 - HMMPfam-Nse4 C-terminal-PF08743,HMMPfam-Binding domain of Nse4/EID3 to Nse3-MAGE-PF15412, at 142,015 to 143,615
9751
mRNA_1384: 9752 - KOG4472 Glycolipid 2-alpha-mannosyltransferase (alpha-1,2-mannosyltransferase), at 143,801 to 145,438
9752
Group
Condition
mRNA
_1380
mRNA
_1381
mRNA
_1382
mRNA
_1383
mRNA
_1384
9748
9749
9750
9751
9752
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.6
-0.2
N.D.
-1.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.1
-0.2
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.1
+0.0
N.D.
-0.3
growth on ypd
YPD
N.D.
-0.2
+0.4
N.D.
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.2
-0.0
N.D.
+0.1
growth on oleic acid
YNB Oleic Acid
N.D.
-0.1
-0.0
N.D.
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.0
-0.0
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.0
+1.0
N.D.
-0.8
growth on oleic acid
YNB Glucose
N.D.
-0.0
+0.1
N.D.
+0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.1
+0.1
N.D.
+0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.1
+0.2
N.D.
+0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.0
+0.1
N.D.
+0.3
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.1
+0.2
N.D.
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.1
+0.1
N.D.
+0.7
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.1
-0.1
N.D.
+0.9
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.2
+0.1
N.D.
+0.8
auxotrophy
Dropout Complete
N.D.
-0.0
+0.4
N.D.
+0.4
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.1
+0.1
N.D.
+0.7
growth on ricinoleic acid
YNB Glucose
N.D.
+0.1
+0.3
N.D.
+0.6
auxotrophy
YNB Glucose
N.D.
+0.1
+0.3
N.D.
+0.7
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.0
+0.6
N.D.
+0.9
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