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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9751 and 9752 are separated by 185 nucleotides
9752 and 9753 are separated by 453 nucleotides
9753 and 9754 are separated by 657 nucleotides
9754 and 9755 are separated by 195 nucleotides
mRNA_1383: 9751 - HMMPfam-Nse4 C-terminal-PF08743,HMMPfam-Binding domain of Nse4/EID3 to Nse3-MAGE-PF15412, at 142,015 to 143,615
9751
mRNA_1384: 9752 - KOG4472 Glycolipid 2-alpha-mannosyltransferase (alpha-1,2-mannosyltransferase), at 143,801 to 145,438
9752
mRNA_1385: 9753 - K06966 K06966 uncharacterized protein, at 145,892 to 146,941
9753
mRNA_1386: 9754 - K06966 K06966 uncharacterized protein, at 147,599 to 148,550
9754
mRNA_1387: 9755 - BLAST bromodomain-containing protein 8 [Cryptococcus ne..., at 148,746 to 149,519
9755
Group
Condition
mRNA
_1383
mRNA
_1384
mRNA
_1385
mRNA
_1386
mRNA
_1387
9751
9752
9753
9754
9755
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-1.1
-0.6
-0.4
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.3
+0.2
-0.5
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.1
+0.1
-0.8
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.1
+0.0
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.8
+0.3
+0.2
+0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.2
+0.3
-0.4
-0.1
growth on ypd
YPD
N.D.
-0.4
+0.2
+0.4
-0.1
growth on oleic acid
YNB Glucose
N.D.
+0.2
+0.1
-0.2
+0.0
growth on oleic acid
YNB Oleic Acid
N.D.
+0.1
+0.2
-0.3
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.9
+0.0
-0.6
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.8
-0.2
-0.4
+0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.4
+0.1
-0.1
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.3
+0.6
-0.2
+0.5
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.3
+0.2
+0.1
+0.1
auxotrophy
Dropout Complete
N.D.
+0.4
-0.1
+0.2
+0.1
growth on ricinoleic acid
YNB Glucose
N.D.
+0.6
+0.1
-0.0
+0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.1
+0.5
+0.6
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.7
+0.3
+0.3
+0.4
auxotrophy
YNB Glucose
N.D.
+0.7
+0.2
+0.6
+0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.7
+0.5
+0.5
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.9
+0.5
-0.0
+0.5
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