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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9755 and 9756 are separated by 629 nucleotides
9756 and 9757 are separated by 1043 nucleotides
9757 and 9758 are separated by 406 nucleotides
9758 and 9759 are separated by 192 nucleotides
mRNA_1387: 9755 - BLAST bromodomain-containing protein 8 [Cryptococcus ne..., at 148,746 to 149,519
9755
mRNA_1388: 9756 - K00698 CHS1 chitin synthase, at 150,149 to 154,291
9756
mRNA_1389: 9757 - Hypothetical Protein, at 155,335 to 156,152
9757
mRNA_1390: 9758 - KOG0988 RNA-directed RNA polymerase QDE-1 required for posttranscriptional gene silencing and RNA interference, at 156,559 to 159,898
9758
mRNA_1391: 9759 - HMMPfam-Phosphotransferase enzyme family-PF01636,SUPERFAMILY--SSF56112, at 160,091 to 161,111
9759
Group
Condition
mRNA
_1387
mRNA
_1388
mRNA
_1389
mRNA
_1390
mRNA
_1391
9755
9756
9757
9758
9759
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
+0.2
-0.2
-0.2
-1.8
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.2
-0.1
+0.1
-1.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.1
+0.2
-0.3
-0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.0
+0.1
-0.0
-0.8
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
+0.1
-0.1
+0.2
-0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.1
-0.2
+0.2
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.3
+0.2
-0.3
-0.3
growth on oleic acid
YNB Glucose
+0.0
-0.1
+0.1
-0.3
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
+0.1
-0.1
-0.0
-0.5
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.0
+0.1
-0.1
-0.1
growth on ricinoleic acid
YNB Glucose
+0.2
-0.1
+0.0
+0.1
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
-0.0
-0.0
+0.0
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.0
-0.1
+0.2
+0.2
auxotrophy
Dropout Complete
+0.1
+0.0
+0.0
-0.0
+0.2
growth on ypd
YPD
-0.1
-0.3
+0.2
+0.1
+0.5
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.1
+0.0
+0.1
+0.2
auxotrophy
YNB Glucose
+0.1
-0.0
+0.1
+0.3
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.1
+0.1
-0.1
+0.1
growth on oleic acid
YNB Oleic Acid
+0.3
-0.0
+0.2
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
+0.1
+0.1
+0.3
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
-0.1
+0.3
+0.1
+0.2
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