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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9756 and 9757 are separated by 1043 nucleotides
9757 and 9758 are separated by 406 nucleotides
9758 and 9759 are separated by 192 nucleotides
9759 and 9760 are separated by 664 nucleotides
mRNA_1388: 9756 - K00698 CHS1 chitin synthase, at 150,149 to 154,291
9756
mRNA_1389: 9757 - Hypothetical Protein, at 155,335 to 156,152
9757
mRNA_1390: 9758 - KOG0988 RNA-directed RNA polymerase QDE-1 required for posttranscriptional gene silencing and RNA interference, at 156,559 to 159,898
9758
mRNA_1391: 9759 - HMMPfam-Phosphotransferase enzyme family-PF01636,SUPERFAMILY--SSF56112, at 160,091 to 161,111
9759
mRNA_1392: 9760 - HMMPfam-DASH complex subunit Dam1-PF08653, at 161,776 to 163,110
9760
Group
Condition
mRNA
_1388
mRNA
_1389
mRNA
_1390
mRNA
_1391
mRNA
_1392
9756
9757
9758
9759
9760
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.2
-0.2
-1.8
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.2
-0.3
-0.4
-0.8
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.1
+0.1
-1.0
+0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.0
+0.1
-0.0
-0.8
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.1
-0.0
-0.5
-0.2
growth on ricinoleic acid
YNB Glucose
-0.1
+0.0
+0.1
-0.2
-0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
+0.2
-0.3
-0.3
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.1
-0.1
+0.1
-0.7
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.2
+0.2
-0.0
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
-0.0
+0.0
-0.3
+0.1
growth on oleic acid
YNB Glucose
-0.1
+0.1
-0.3
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.1
+0.3
-0.2
-0.3
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.0
+0.1
+0.2
-0.3
auxotrophy
YNB Glucose
-0.0
+0.1
+0.3
-0.1
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.1
+0.2
+0.2
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.0
+0.1
-0.1
-0.1
+0.4
auxotrophy
Dropout Complete
+0.0
+0.0
-0.0
+0.2
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+0.3
+0.1
+0.2
+0.0
growth on oleic acid
YNB Oleic Acid
-0.0
+0.2
-0.1
+0.1
+0.3
growth on ypd
YPD
-0.3
+0.2
+0.1
+0.5
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.1
+0.2
-0.4
+1.3
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