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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9758 and 9759 are separated by 192 nucleotides
9759 and 9760 are separated by 664 nucleotides
9760 and 9761 are separated by 152 nucleotides
9761 and 9762 are separated by 12 nucleotides
mRNA_1390: 9758 - KOG0988 RNA-directed RNA polymerase QDE-1 required for posttranscriptional gene silencing and RNA interference, at 156,559 to 159,898
9758
mRNA_1391: 9759 - HMMPfam-Phosphotransferase enzyme family-PF01636,SUPERFAMILY--SSF56112, at 160,091 to 161,111
9759
mRNA_1392: 9760 - HMMPfam-DASH complex subunit Dam1-PF08653, at 161,776 to 163,110
9760
mRNA_1393: 9761 - Hypothetical Protein, at 163,263 to 164,488
9761
mRNA_1394: 9762 - K04907 KCNH4 potassium voltage-gated channel Eag-related subfamily H member 4, at 164,501 to 165,028
9762
Group
Condition
mRNA
_1390
mRNA
_1391
mRNA
_1392
mRNA
_1393
mRNA
_1394
9758
9759
9760
9761
9762
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-0.4
-0.8
+0.1
-0.6
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-0.3
-0.4
-0.7
+0.4
growth on oleic acid
YNB Glucose
-0.3
+0.1
+0.1
-0.5
+0.2
growth on oleic acid
YNB Oleic Acid
-0.1
+0.1
+0.3
-0.9
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.2
+0.0
-1.2
+0.7
auxotrophy
YNB Glucose 75mM Methionine
-0.0
-0.8
-0.0
-0.2
+0.8
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.1
-0.7
+0.0
+0.6
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.2
-0.3
+0.4
-0.5
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.1
+0.4
-0.2
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.0
-0.2
-0.5
+0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-1.8
+0.3
+1.4
+0.4
auxotrophy
YNB Glucose
+0.3
-0.1
-0.2
+0.0
+0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
-0.3
+0.1
+0.3
+0.5
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.2
-0.0
+0.1
+0.5
growth on ricinoleic acid
YNB Glucose
+0.1
-0.2
-0.5
+1.2
+0.5
growth on ypd
YPD
+0.1
+0.5
+0.1
-0.1
+0.6
auxotrophy
Dropout Complete
-0.0
+0.2
+0.1
+0.6
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-1.0
+0.0
+1.7
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
-0.5
-0.2
+1.4
+0.8
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
-0.2
-0.3
+1.6
+0.6
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.4
+1.3
+0.2
+0.8
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