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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9759 and 9760 are separated by 664 nucleotides
9760 and 9761 are separated by 152 nucleotides
9761 and 9762 are separated by 12 nucleotides
9762 and 9763 are separated by 1490 nucleotides
mRNA_1391: 9759 - HMMPfam-Phosphotransferase enzyme family-PF01636,SUPERFAMILY--SSF56112, at 160,091 to 161,111
9759
mRNA_1392: 9760 - HMMPfam-DASH complex subunit Dam1-PF08653, at 161,776 to 163,110
9760
mRNA_1393: 9761 - Hypothetical Protein, at 163,263 to 164,488
9761
mRNA_1394: 9762 - K04907 KCNH4 potassium voltage-gated channel Eag-related subfamily H member 4, at 164,501 to 165,028
9762
mRNA_1395: 9763 - K07756 IP6K, IHPK inositol-hexakisphosphate 5-kinase, at 166,519 to 170,946
9763
Group
Condition
mRNA
_1391
mRNA
_1392
mRNA
_1393
mRNA
_1394
mRNA
_1395
9759
9760
9761
9762
9763
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
-0.8
+0.1
-0.6
-0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-0.4
-0.7
+0.4
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.0
-1.2
+0.7
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.7
+0.0
+0.6
-0.5
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.2
-0.5
+0.6
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.3
+0.4
-0.5
+0.0
growth on oleic acid
YNB Glucose
+0.1
+0.1
-0.5
+0.2
-0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.8
-0.0
-0.2
+0.8
+0.1
growth on oleic acid
YNB Oleic Acid
+0.1
+0.3
-0.9
+0.3
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-1.8
+0.3
+1.4
+0.4
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
+0.1
+0.3
+0.5
-0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.4
-0.2
-0.1
+0.2
auxotrophy
YNB Glucose
-0.1
-0.2
+0.0
+0.6
+0.1
growth on ricinoleic acid
YNB Glucose
-0.2
-0.5
+1.2
+0.5
-0.2
growth on ypd
YPD
+0.5
+0.1
-0.1
+0.6
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-1.0
+0.0
+1.7
+0.5
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.0
+0.1
+0.5
+0.2
auxotrophy
Dropout Complete
+0.2
+0.1
+0.6
+0.3
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.3
+1.6
+0.6
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
+1.3
+0.2
+0.8
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.5
-0.2
+1.4
+0.8
+0.5
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