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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9775 and 9776 are separated by 693 nucleotides
9776 and 9777 are separated by 555 nucleotides
9777 and 9778 are separated by 133 nucleotides
9778 and 9779 are separated by 992 nucleotides
mRNA_1407: 9775 - K02937 RP-L7e, RPL7 large subunit ribosomal protein L7e, at 198,509 to 200,718
9775
mRNA_1408: 9776 - K02936 RP-L7Ae, RPL7A large subunit ribosomal protein L7Ae, at 201,412 to 202,510
9776
mRNA_1409: 9777 - ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257, at 203,066 to 203,566
9777
mRNA_1410: 9778 - K02920 RP-L36e, RPL36 large subunit ribosomal protein L36e, at 203,700 to 204,648
9778
mRNA_1411: 9779 - Hypothetical Protein, at 205,641 to 206,403
9779
Group
Condition
mRNA
_1407
mRNA
_1408
mRNA
_1409
mRNA
_1410
mRNA
_1411
9775
9776
9777
9778
9779
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
-0.3
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
-0.3
N.D.
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
-0.1
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
-0.1
N.D.
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
-0.2
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
-0.2
N.D.
+0.1
auxotrophy
Dropout Complete
N.D.
N.D.
-0.1
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.1
N.D.
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.4
N.D.
+0.5
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
-0.2
N.D.
+0.2
growth on oleic acid
YNB Glucose
N.D.
N.D.
-0.0
N.D.
+0.2
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
+0.2
N.D.
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
+0.1
N.D.
+0.1
auxotrophy
YNB Glucose
N.D.
N.D.
+0.1
N.D.
+0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
-0.1
N.D.
+0.4
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
+0.0
N.D.
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
+0.5
N.D.
+0.1
growth on ypd
YPD
N.D.
N.D.
+0.6
N.D.
-0.0
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
+0.3
N.D.
+0.4
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
+0.6
N.D.
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
+0.9
N.D.
+0.2
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