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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9779 and 9780 are separated by 506 nucleotides
9780 and 9781 are separated by 1984 nucleotides
9781 and 9782 are separated by 270 nucleotides
9782 and 9783 are separated by 851 nucleotides
mRNA_1411: 9779 - Hypothetical Protein, at 205,641 to 206,403
9779
mRNA_1412: 9780 - K11699 RDR, RDRP RNA-dependent RNA polymerase, at 206,910 to 211,871
9780
mRNA_1413: 9781 - KOG1711 Mitochondrial/chloroplast ribosomal protein L22, at 213,856 to 214,954
9781
mRNA_1414: 9782 - K19801 PI4KB phosphatidylinositol 4-kinase B, at 215,225 to 219,858
9782
mRNA_1415: 9783 - Hypothetical Protein, at 220,710 to 221,651
9783
Group
Condition
mRNA
_1411
mRNA
_1412
mRNA
_1413
mRNA
_1414
mRNA
_1415
9779
9780
9781
9782
9783
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.0
N.D.
N.D.
-0.8
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.3
N.D.
N.D.
-0.4
ypd buoyancy
40 hrs High Buoyancy
+0.4
-0.2
N.D.
N.D.
-0.5
ypd buoyancy
40 hrs No Buoyancy Separation
+0.5
-0.1
N.D.
N.D.
-0.7
ypd buoyancy
40 hrs Low Buoyancy
+0.4
-0.2
N.D.
N.D.
-0.4
growth on ypd
YPD
-0.0
+0.1
N.D.
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
+0.1
N.D.
N.D.
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.3
N.D.
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
+0.1
N.D.
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.2
N.D.
N.D.
+0.6
ypd buoyancy
40 hrs Median Buoyancy
+0.4
-0.1
N.D.
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.1
N.D.
N.D.
+0.6
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.0
N.D.
N.D.
+0.6
growth on oleic acid
YNB Glucose
+0.2
-0.1
N.D.
N.D.
+0.7
auxotrophy
YNB Glucose
+0.2
-0.1
N.D.
N.D.
+0.7
auxotrophy
Dropout Complete
+0.0
+0.1
N.D.
N.D.
+0.7
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.0
N.D.
N.D.
+0.7
growth on oleic acid
YNB Oleic Acid
-0.0
-0.0
N.D.
N.D.
+1.1
growth on ricinoleic acid
YNB Glucose
+0.3
+0.2
N.D.
N.D.
+0.7
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.1
N.D.
N.D.
+1.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.3
N.D.
N.D.
+1.0
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