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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9780 and 9781 are separated by 1984 nucleotides
9781 and 9782 are separated by 270 nucleotides
9782 and 9783 are separated by 851 nucleotides
9783 and 9784 are separated by 3116 nucleotides
mRNA_1412: 9780 - K11699 RDR, RDRP RNA-dependent RNA polymerase, at 206,910 to 211,871
9780
mRNA_1413: 9781 - KOG1711 Mitochondrial/chloroplast ribosomal protein L22, at 213,856 to 214,954
9781
mRNA_1414: 9782 - K19801 PI4KB phosphatidylinositol 4-kinase B, at 215,225 to 219,858
9782
mRNA_1415: 9783 - Hypothetical Protein, at 220,710 to 221,651
9783
mRNA_1416: 9784 - BLAST amino-acid permease [Pseudozyma hubeiensis SY62], at 224,768 to 225,675
9784
Group
Condition
mRNA
_1412
mRNA
_1413
mRNA
_1414
mRNA
_1415
mRNA
_1416
9780
9781
9782
9783
9784
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
N.D.
N.D.
-0.7
-0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.2
N.D.
N.D.
-0.4
-0.6
ypd buoyancy
40 hrs High Buoyancy
-0.2
N.D.
N.D.
-0.5
-0.3
growth on ypd
YPD
+0.1
N.D.
N.D.
-0.1
-0.7
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
N.D.
N.D.
-0.8
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
N.D.
N.D.
-0.0
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
N.D.
N.D.
-0.0
-0.6
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
N.D.
N.D.
-0.4
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
N.D.
N.D.
+0.6
-0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
N.D.
N.D.
+0.6
-0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
N.D.
N.D.
+0.4
-0.2
growth on oleic acid
YNB Glucose
-0.1
N.D.
N.D.
+0.7
-0.2
auxotrophy
YNB Glucose
-0.1
N.D.
N.D.
+0.7
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
N.D.
N.D.
-0.3
+0.6
auxotrophy
YNB Glucose 75mM Arginine
+0.0
N.D.
N.D.
+0.7
-0.1
growth on oleic acid
YNB Oleic Acid
-0.0
N.D.
N.D.
+1.1
-0.3
auxotrophy
Dropout Complete
+0.1
N.D.
N.D.
+0.7
+0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.0
N.D.
N.D.
+0.6
+0.3
growth on ricinoleic acid
YNB Glucose
+0.2
N.D.
N.D.
+0.7
+0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
N.D.
N.D.
+1.2
+0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
N.D.
N.D.
+1.0
+0.6
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