Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 9784 and 9785 are separated by 1571 nucleotides9785 and 9786 are separated by 633 nucleotides9786 and 9787 are separated by 453 nucleotides9787 and 9788 are separated by 593 nucleotides mRNA_1416: 9784 - BLAST amino-acid permease [Pseudozyma hubeiensis SY62], at 224,768 to 225,675 9784 mRNA_1417: 9785 - K01567 pdaA peptidoglycan-N-acetylmuramic acid deacetylase, at 227,247 to 228,373 9785 mRNA_1418: 9786 - HMMPfam-Fungal protein of unknown function (DUF1748)-PF08520, at 229,007 to 229,464 9786 mRNA_1419: 9787 - HMMPfam-PH domain-PF00169,ProSiteProfiles-PH domain profile.-PS50003,SMART-Pleckstrin homology domain.-SM00233,SUPERFAMILY--SSF50729, at 229,918 to 235,537 9787 mRNA_1420: 9788 - KOG4269 Rac GTPase-activating protein BCR/ABR, at 236,131 to 238,616 9788
Group Condition mRNA_1416 mRNA_1417 mRNA_1418 mRNA_1419 mRNA_1420
9784 9785 9786 9787 9788
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.6 -0.4 -1.1 +0.1 +0.0
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.6 -0.5 +0.0 +0.0 -0.4
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.6 +0.1 -0.7 +0.1 -0.1
facs on lipid accumulation Sorted No BODIPY Gate +0.2 -0.6 -1.2 -0.1 +0.4
growth on ricinoleic acid YNB Ricinoleic Acid +0.6 -0.3 -0.7 -0.3 -0.5
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.2 +0.3 -0.8 +0.0 -0.2
ypd buoyancy 40 hrs Low Buoyancy -0.6 +0.1 -0.3 +0.2 -0.1
facs on lipid accumulation Sorted High BODIPY Gate +0.6 +0.2 -1.7 +0.1 +0.5
growth on oleic acid YNB Glucose -0.2 -0.3 +0.2 -0.1 -0.0
ypd buoyancy 40 hrs No Buoyancy Separation -0.4 +0.3 +0.2 -0.0 -0.4
growth on ypd YPD -0.7 +0.3 +0.1 -0.1 +0.2
auxotrophy YNB Glucose -0.2 -0.6 +0.2 +0.1 +0.2
auxotrophy YNB Glucose 75mM Arginine -0.1 -0.1 -0.0 +0.0 -0.0
growth on oleic acid YNB Oleic Acid -0.3 +0.2 +0.3 -0.0 -0.2
ypd buoyancy 40 hrs High Buoyancy -0.3 +0.1 +0.2 +0.3 +0.1
auxotrophy Dropout Complete +0.0 -0.3 +0.7 -0.0 -0.0
facs on lipid accumulation Sorted Low BODIPY Gate +0.1 +0.5 -0.6 +0.0 +0.4
auxotrophy YNB Glucose 75mM Methionine +0.3 +0.1 +0.1 +0.2 +0.1
growth on ricinoleic acid YNB Glucose +0.5 +0.2 +0.1 -0.0 +0.2
growth on ricinoleic acid YNB Methylricinoleic Acid +0.6 +0.8 -0.3 -0.0 -0.1
ypd buoyancy 40 hrs Median Buoyancy -0.4 +0.5 +0.6 +0.3 +0.3
remove
mRNA_1416
plot
remove
mRNA_1417
plot
remove
mRNA_1418
remove
mRNA_1419
plot
remove
mRNA_1420
plot