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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9784 and 9785 are separated by 1571 nucleotides
9785 and 9786 are separated by 633 nucleotides
9786 and 9787 are separated by 453 nucleotides
9787 and 9788 are separated by 593 nucleotides
mRNA_1416: 9784 - BLAST amino-acid permease [Pseudozyma hubeiensis SY62], at 224,768 to 225,675
9784
mRNA_1417: 9785 - K01567 pdaA peptidoglycan-N-acetylmuramic acid deacetylase, at 227,247 to 228,373
9785
mRNA_1418: 9786 - HMMPfam-Fungal protein of unknown function (DUF1748)-PF08520, at 229,007 to 229,464
9786
mRNA_1419: 9787 - HMMPfam-PH domain-PF00169,ProSiteProfiles-PH domain profile.-PS50003,SMART-Pleckstrin homology domain.-SM00233,SUPERFAMILY--SSF50729, at 229,918 to 235,537
9787
mRNA_1420: 9788 - KOG4269 Rac GTPase-activating protein BCR/ABR, at 236,131 to 238,616
9788
Group
Condition
mRNA
_1416
mRNA
_1417
mRNA
_1418
mRNA
_1419
mRNA
_1420
9784
9785
9786
9787
9788
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.6
-0.4
-1.1
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.6
-0.5
+0.0
+0.0
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.6
+0.1
-0.7
+0.1
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.6
-1.2
-0.1
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.6
-0.3
-0.7
-0.3
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.3
-0.8
+0.0
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.6
+0.1
-0.3
+0.2
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.6
+0.2
-1.7
+0.1
+0.5
growth on oleic acid
YNB Glucose
-0.2
-0.3
+0.2
-0.1
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
+0.3
+0.2
-0.0
-0.4
growth on ypd
YPD
-0.7
+0.3
+0.1
-0.1
+0.2
auxotrophy
YNB Glucose
-0.2
-0.6
+0.2
+0.1
+0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.1
-0.0
+0.0
-0.0
growth on oleic acid
YNB Oleic Acid
-0.3
+0.2
+0.3
-0.0
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.1
+0.2
+0.3
+0.1
auxotrophy
Dropout Complete
+0.0
-0.3
+0.7
-0.0
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.5
-0.6
+0.0
+0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.1
+0.1
+0.2
+0.1
growth on ricinoleic acid
YNB Glucose
+0.5
+0.2
+0.1
-0.0
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.6
+0.8
-0.3
-0.0
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.4
+0.5
+0.6
+0.3
+0.3
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