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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9789 and 9790 are separated by 594 nucleotides
9790 and 9791 are separated by 460 nucleotides
9791 and 9792 are separated by 299 nucleotides
9792 and 9793 are separated by 3019 nucleotides
mRNA_1421: 9789 - K06950 K06950 uncharacterized protein, at 239,485 to 240,342
9789
mRNA_1422: 9790 - K12236 NFX1 transcriptional repressor NF-X1, at 240,937 to 244,730
9790
mRNA_1423: 9791 - Hypothetical Protein, at 245,191 to 249,551
9791
mRNA_1424: 9792 - HMMPfam-NUP50 (Nucleoporin 50 kDa)-PF08911, at 249,851 to 250,206
9792
mRNA_1425: 9793 - HMMPfam-Protein of unknown function (DUF4449)-PF14613,SUPERFAMILY--SSF55394, at 253,226 to 256,985
9793
Group
Condition
mRNA
_1421
mRNA
_1422
mRNA
_1423
mRNA
_1424
mRNA
_1425
9789
9790
9791
9792
9793
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.6
-0.6
+0.1
+0.1
-0.1
auxotrophy
Dropout Complete
-1.0
+0.3
-0.2
-0.7
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.5
-0.2
+0.0
-0.5
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.9
-0.2
-0.2
+0.4
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
-0.4
-0.1
+0.0
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-1.3
+0.2
-0.2
+0.1
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
+0.1
+0.4
-0.5
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.3
-0.2
-0.5
-0.0
growth on ypd
YPD
-0.2
-0.0
+0.1
-0.5
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.7
-0.0
+0.3
-0.0
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
+0.1
-0.2
-0.0
-0.1
growth on oleic acid
YNB Glucose
-0.2
-0.2
-0.2
+0.6
-0.2
growth on ricinoleic acid
YNB Glucose
-0.5
-0.2
+0.4
+0.2
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
-0.1
-0.0
+0.2
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
+0.0
+0.1
-0.0
+0.4
growth on oleic acid
YNB Oleic Acid
-0.1
-0.2
+0.1
+0.6
-0.2
auxotrophy
YNB Glucose
-0.4
+0.2
-0.2
+0.4
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.3
-0.1
-0.1
+0.4
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-0.1
-0.1
+0.3
+0.6
ypd buoyancy
40 hrs Median Buoyancy
+0.7
+0.1
-0.1
+0.5
-0.2
ypd buoyancy
40 hrs High Buoyancy
+1.0
-0.2
-0.0
+0.8
-0.3
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