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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9792 and 9793 are separated by 3019 nucleotides
9793 and 9794 are separated by 301 nucleotides
9794 and 9795 are separated by 283 nucleotides
9795 and 9796 are separated by 782 nucleotides
mRNA_1424: 9792 - HMMPfam-NUP50 (Nucleoporin 50 kDa)-PF08911, at 249,851 to 250,206
9792
mRNA_1425: 9793 - HMMPfam-Protein of unknown function (DUF4449)-PF14613,SUPERFAMILY--SSF55394, at 253,226 to 256,985
9793
mRNA_1426: 9794 - Hypothetical Protein, at 257,287 to 258,707
9794
mRNA_1427: 9795 - Hypothetical Protein, at 258,991 to 261,200
9795
mRNA_1428: 9796 - HMMPfam-Protein of unknown function (DUF3237)-PF11578, at 261,983 to 262,469
9796
Group
Condition
mRNA
_1424
mRNA
_1425
mRNA
_1426
mRNA
_1427
mRNA
_1428
9792
9793
9794
9795
9796
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
-0.1
-0.4
N.D.
-1.7
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
+0.0
-0.4
N.D.
-1.5
growth on ypd
YPD
-0.5
+0.0
-0.7
N.D.
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.5
-0.0
-1.2
N.D.
+0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
-0.2
+0.7
N.D.
-1.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-0.1
-0.7
N.D.
-0.0
auxotrophy
Dropout Complete
-0.7
+0.1
+0.0
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.5
-0.0
-0.2
N.D.
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
+0.1
-1.2
N.D.
+0.8
ypd buoyancy
40 hrs Median Buoyancy
+0.5
-0.2
-0.0
N.D.
-0.2
growth on ricinoleic acid
YNB Glucose
+0.2
+0.0
+0.3
N.D.
-0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
-0.0
+0.6
N.D.
-0.4
auxotrophy
YNB Glucose
+0.4
+0.3
-0.1
N.D.
-0.3
growth on oleic acid
YNB Oleic Acid
+0.6
-0.2
-0.2
N.D.
-0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.4
-0.0
N.D.
-0.1
growth on oleic acid
YNB Glucose
+0.6
-0.2
-0.5
N.D.
+0.6
ypd buoyancy
40 hrs High Buoyancy
+0.8
-0.3
-0.4
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.3
-0.0
N.D.
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.4
-0.1
+0.3
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
+0.6
+0.9
N.D.
-0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
+0.4
+1.0
N.D.
+0.7
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