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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9797 and 9798 are separated by 780 nucleotides
9798 and 9799 are separated by 258 nucleotides
9799 and 9800 are separated by 982 nucleotides
9800 and 9801 are separated by 450 nucleotides
mRNA_1429: 9797 - HMMPfam-Protein of unknown function (DUF3237)-PF11578, at 262,714 to 263,546
9797
mRNA_1430: 9798 - KOG4205 RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1, at 264,327 to 265,821
9798
mRNA_1431: 9799 - Hypothetical Protein, at 266,080 to 266,508
9799
mRNA_1432: 9800 - K01653 E2.2.1.6S, ilvH, ilvN acetolactate synthase I/III small subunit, at 267,491 to 268,796
9800
mRNA_1433: 9801 - K17081 PHB2 prohibitin 2, at 269,247 to 270,588
9801
Group
Condition
mRNA
_1429
mRNA
_1430
mRNA
_1431
mRNA
_1432
mRNA
_1433
9797
9798
9799
9800
9801
ypd buoyancy
40 hrs No Buoyancy Separation
-2.6
-0.2
-0.8
N.D.
+0.5
growth on oleic acid
YNB Oleic Acid
-1.0
-1.0
+0.3
N.D.
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-1.1
+0.4
N.D.
-1.0
auxotrophy
YNB Glucose 75mM Methionine
-0.9
-0.4
-0.1
N.D.
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.5
-1.0
+0.3
N.D.
-1.3
growth on oleic acid
YNB Glucose
-0.8
-0.7
+0.2
N.D.
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-0.6
-0.1
N.D.
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-0.4
-0.1
N.D.
-0.0
growth on ricinoleic acid
YNB Glucose
+0.4
-0.8
+0.4
N.D.
-0.8
auxotrophy
YNB Glucose
-0.1
-0.5
+0.1
N.D.
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.1
-0.2
N.D.
-0.6
auxotrophy
YNB Glucose 75mM Arginine
-0.3
-0.3
+0.3
N.D.
-0.2
auxotrophy
Dropout Complete
-0.4
-0.4
+0.5
N.D.
-0.0
growth on ypd
YPD
-0.5
-0.0
+0.2
N.D.
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.4
+0.2
-0.5
N.D.
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
-0.3
-0.2
N.D.
+0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
-0.1
+0.1
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
+0.2
-0.1
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
+0.5
-0.2
N.D.
+0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.4
+0.4
-0.2
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.9
-0.1
+0.1
N.D.
+0.2
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