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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9800 and 9801 are separated by 450 nucleotides
9801 and 9802 are separated by 302 nucleotides
9802 and 9803 are separated by 209 nucleotides
9803 and 9804 are separated by 352 nucleotides
mRNA_1432: 9800 - K01653 E2.2.1.6S, ilvH, ilvN acetolactate synthase I/III small subunit, at 267,491 to 268,796
9800
mRNA_1433: 9801 - K17081 PHB2 prohibitin 2, at 269,247 to 270,588
9801
mRNA_1434: 9802 - Hypothetical Protein, at 270,891 to 274,299
9802
mRNA_1435: 9803 - Hypothetical Protein, at 274,509 to 275,627
9803
mRNA_1436: 9804 - BLAST Stil protein [Mus musculus], at 275,980 to 277,394
9804
Group
Condition
mRNA
_1432
mRNA
_1433
mRNA
_1434
mRNA
_1435
mRNA
_1436
9800
9801
9802
9803
9804
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.0
-0.0
-2.1
-0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.2
-0.3
-1.3
-0.3
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.6
+0.1
-1.0
-0.5
auxotrophy
YNB Glucose
N.D.
-0.2
+0.1
-1.3
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.0
+0.0
-1.2
-0.3
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.2
-0.2
-0.6
-0.4
auxotrophy
Dropout Complete
N.D.
-0.0
-0.1
-0.8
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-1.3
-0.0
+0.4
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.5
+0.2
-0.6
-1.0
growth on ricinoleic acid
YNB Glucose
N.D.
-0.8
+0.3
-0.2
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.2
-0.2
-0.5
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.1
-0.4
+0.4
-0.2
growth on ypd
YPD
N.D.
+0.0
+0.3
-0.7
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-1.0
-0.1
+1.2
-0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.3
+0.0
-0.2
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.0
+0.0
+0.6
-0.6
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.1
+0.0
-0.2
+0.1
growth on oleic acid
YNB Glucose
N.D.
+0.0
+0.1
+0.4
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.5
-0.8
+0.3
+0.5
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.1
+0.2
+0.4
+0.0
growth on oleic acid
YNB Oleic Acid
N.D.
-0.2
+0.1
+0.9
-0.1
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