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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9807 and 9808 are separated by 198 nucleotides
9808 and 9809 are separated by 300 nucleotides
9809 and 9810 are separated by 431 nucleotides
9810 and 9811 are separated by 1173 nucleotides
mRNA_1439: 9807 - K03544 clpX, CLPX ATP-dependent Clp protease ATP-binding subunit ClpX, at 281,812 to 284,553
9807
mRNA_1440: 9808 - Hypothetical Protein, at 284,752 to 285,459
9808
mRNA_1441: 9809 - K17871 ndh1 NADH-ubiquinone reductase (non-electrogenic), at 285,760 to 287,814
9809
mRNA_1442: 9810 - K03549 kup KUP system potassium uptake protein, at 288,246 to 290,884
9810
mRNA_1443: 9811 - Hypothetical Protein, at 292,058 to 293,115
9811
Group
Condition
mRNA
_1439
mRNA
_1440
mRNA
_1441
mRNA
_1442
mRNA
_1443
9807
9808
9809
9810
9811
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.3
-0.1
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
-0.1
-0.0
-0.3
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-1.0
+0.3
+0.1
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.1
+0.0
-0.4
+0.0
growth on oleic acid
YNB Oleic Acid
-0.1
-0.5
+0.1
-0.1
+0.2
auxotrophy
YNB Glucose
-0.0
-0.1
-0.1
-0.2
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.1
+0.1
-0.1
+0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.2
+0.0
-0.0
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
-0.2
+0.0
-0.1
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.3
-0.1
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
-0.2
-0.0
+0.0
+0.0
growth on ricinoleic acid
YNB Glucose
-0.1
-0.2
+0.2
-0.1
+0.1
auxotrophy
Dropout Complete
-0.0
-0.1
+0.1
-0.0
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
+0.2
+0.1
+0.2
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.4
-0.2
-0.1
+0.2
growth on oleic acid
YNB Glucose
+0.0
+0.1
+0.1
+0.1
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.2
+0.2
+0.3
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.0
+0.0
+0.3
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
+0.3
+0.4
+0.2
-0.2
growth on ypd
YPD
-0.2
+0.4
-0.1
+0.3
+0.4
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.1
+0.5
+0.1
+0.1
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