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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9808 and 9809 are separated by 300 nucleotides
9809 and 9810 are separated by 431 nucleotides
9810 and 9811 are separated by 1173 nucleotides
9811 and 9812 are separated by 1103 nucleotides
mRNA_1440: 9808 - Hypothetical Protein, at 284,752 to 285,459
9808
mRNA_1441: 9809 - K17871 ndh1 NADH-ubiquinone reductase (non-electrogenic), at 285,760 to 287,814
9809
mRNA_1442: 9810 - K03549 kup KUP system potassium uptake protein, at 288,246 to 290,884
9810
mRNA_1443: 9811 - Hypothetical Protein, at 292,058 to 293,115
9811
mRNA_1444: 9812 - KOG4173 Alpha-SNAP protein, at 294,219 to 295,156
9812
Group
Condition
mRNA
_1440
mRNA
_1441
mRNA
_1442
mRNA
_1443
mRNA
_1444
9808
9809
9810
9811
9812
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+0.0
-0.4
+0.0
-1.4
growth on oleic acid
YNB Oleic Acid
-0.5
+0.1
-0.1
+0.2
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-1.0
+0.3
+0.1
+0.0
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-0.1
+0.1
-0.2
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.1
-0.1
+0.0
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
+0.4
+0.2
-0.2
-0.7
auxotrophy
YNB Glucose 75mM Arginine
+0.3
-0.1
-0.2
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.0
-0.1
+0.1
+0.5
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.2
+0.3
+0.2
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.0
-0.3
+0.0
+0.6
auxotrophy
YNB Glucose
-0.1
-0.1
-0.2
+0.1
+0.6
growth on ricinoleic acid
YNB Glucose
-0.2
+0.2
-0.1
+0.1
+0.3
growth on oleic acid
YNB Glucose
+0.1
+0.1
+0.1
+0.2
-0.1
auxotrophy
Dropout Complete
-0.1
+0.1
-0.0
+0.2
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.0
+0.0
+0.0
+0.6
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.0
+0.3
+0.3
+0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.0
-0.0
+0.1
+0.7
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.5
+0.1
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
-0.2
-0.1
+0.2
+0.5
growth on ypd
YPD
+0.4
-0.1
+0.3
+0.4
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
+0.1
+0.2
-0.0
+0.8
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