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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9809 and 9810 are separated by 431 nucleotides
9810 and 9811 are separated by 1173 nucleotides
9811 and 9812 are separated by 1103 nucleotides
9812 and 9813 are separated by 138 nucleotides
mRNA_1441: 9809 - K17871 ndh1 NADH-ubiquinone reductase (non-electrogenic), at 285,760 to 287,814
9809
mRNA_1442: 9810 - K03549 kup KUP system potassium uptake protein, at 288,246 to 290,884
9810
mRNA_1443: 9811 - Hypothetical Protein, at 292,058 to 293,115
9811
mRNA_1444: 9812 - KOG4173 Alpha-SNAP protein, at 294,219 to 295,156
9812
mRNA_1445: 9813 - K20045 ITSN intersectin, at 295,295 to 301,799
9813
Group
Condition
mRNA
_1441
mRNA
_1442
mRNA
_1443
mRNA
_1444
mRNA
_1445
9809
9810
9811
9812
9813
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
-0.4
+0.0
-1.4
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.2
+0.1
+0.0
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
+0.2
-0.2
-0.7
+0.2
growth on oleic acid
YNB Oleic Acid
+0.1
-0.1
+0.2
-0.1
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.3
+0.2
-0.2
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.1
-0.2
+0.4
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
+0.1
+0.0
+0.2
-0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.3
+0.3
+0.0
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.1
+0.0
+0.1
+0.3
growth on oleic acid
YNB Glucose
+0.1
+0.1
+0.2
-0.1
+0.2
growth on ypd
YPD
-0.1
+0.3
+0.4
+0.0
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.5
+0.1
+0.1
-0.1
-0.1
auxotrophy
Dropout Complete
+0.1
-0.0
+0.2
+0.3
+0.0
auxotrophy
YNB Glucose
-0.1
-0.2
+0.1
+0.6
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
-0.3
+0.0
+0.6
+0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.0
-0.0
+0.1
+0.7
-0.0
growth on ricinoleic acid
YNB Glucose
+0.2
-0.1
+0.1
+0.3
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
+0.0
+0.0
+0.6
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.2
-0.0
+0.8
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
-0.1
+0.1
+0.5
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.1
+0.2
+0.5
+0.4
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