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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9811 and 9812 are separated by 1103 nucleotides
9812 and 9813 are separated by 138 nucleotides
9813 and 9814 are separated by 1345 nucleotides
9814 and 9815 are separated by 687 nucleotides
mRNA_1443: 9811 - Hypothetical Protein, at 292,058 to 293,115
9811
mRNA_1444: 9812 - KOG4173 Alpha-SNAP protein, at 294,219 to 295,156
9812
mRNA_1445: 9813 - K20045 ITSN intersectin, at 295,295 to 301,799
9813
mRNA_1446: 9814 - BLAST Mucin-17 [Rhizoctonia solani], at 303,145 to 306,587
9814
mRNA_1447: 9815 - ProSiteProfiles-Src homology 3 (SH3) domain profile.-PS50002,SMART-Src homology 3 domains-SM00326,SUPERFAMILY--SSF50044, at 307,275 to 311,482
9815
Group
Condition
mRNA
_1443
mRNA
_1444
mRNA
_1445
mRNA
_1446
mRNA
_1447
9811
9812
9813
9814
9815
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
-1.4
-0.0
N.D.
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
-0.7
+0.2
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.0
+0.0
N.D.
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.1
-0.1
N.D.
-0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.2
-0.1
N.D.
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
+0.2
-0.3
N.D.
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.3
+0.0
-0.1
N.D.
+0.1
growth on oleic acid
YNB Oleic Acid
+0.2
-0.1
+0.2
N.D.
-0.1
growth on oleic acid
YNB Glucose
+0.2
-0.1
+0.2
N.D.
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.4
+0.2
N.D.
-0.1
auxotrophy
Dropout Complete
+0.2
+0.3
+0.0
N.D.
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
+0.1
+0.3
N.D.
-0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.7
-0.0
N.D.
-0.2
growth on ypd
YPD
+0.4
+0.0
-0.1
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
+0.6
+0.1
N.D.
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
+0.8
-0.3
N.D.
+0.1
growth on ricinoleic acid
YNB Glucose
+0.1
+0.3
+0.2
N.D.
+0.2
auxotrophy
YNB Glucose
+0.1
+0.6
+0.2
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
+0.6
+0.3
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.5
+0.4
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.5
+0.4
N.D.
-0.1
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