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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9815 and 9816 are separated by 2372 nucleotides
9816 and 9817 are separated by 377 nucleotides
9817 and 9818 are separated by 342 nucleotides
9818 and 9819 are separated by 140 nucleotides
mRNA_1447: 9815 - ProSiteProfiles-Src homology 3 (SH3) domain profile.-PS50002,SMART-Src homology 3 domains-SM00326,SUPERFAMILY--SSF50044, at 307,275 to 311,482
9815
mRNA_1448: 9816 - KOG4159 Predicted E3 ubiquitin ligase, at 313,855 to 315,152
9816
mRNA_1449: 9817 - K03325 TC.ACR3 arsenite transporter, ACR3 family, at 315,530 to 317,378
9817
mRNA_1450: 9818 - K20826 RPAP1 RNA polymerase II-associated protein 1, at 317,721 to 321,691
9818
mRNA_1451: 9819 - K11987 PTGS2, COX2 prostaglandin-endoperoxide synthase 2, at 321,832 to 325,764
9819
Group
Condition
mRNA
_1447
mRNA
_1448
mRNA
_1449
mRNA
_1450
mRNA
_1451
9815
9816
9817
9818
9819
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.9
-0.5
-2.3
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.1
-0.4
-1.1
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.3
-0.1
-0.8
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.6
-0.2
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.3
-0.1
-0.7
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.3
-0.1
-0.4
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
+0.0
-0.3
-0.6
+0.0
auxotrophy
Dropout Complete
-0.1
+0.1
+0.1
-0.7
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.0
+0.0
-0.5
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.0
-0.5
+0.0
-0.2
growth on oleic acid
YNB Glucose
-0.0
+0.2
-0.2
-0.3
-0.1
auxotrophy
YNB Glucose
-0.2
-0.1
+0.0
-0.1
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.1
-0.2
-0.1
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.0
-0.1
+0.1
-0.2
growth on ypd
YPD
+0.2
-0.2
-0.1
+0.0
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.2
+0.3
-0.6
+0.1
growth on oleic acid
YNB Oleic Acid
-0.1
+0.3
-0.3
+0.2
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.1
-0.3
-0.1
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
-0.0
-0.2
+1.0
-0.1
growth on ricinoleic acid
YNB Glucose
+0.2
+0.3
-0.1
+0.8
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+3.6
-0.8
-1.5
+0.1
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