Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 9818 and 9819 are separated by 140 nucleotides9819 and 9820 are separated by 479 nucleotides9820 and 9821 are separated by 189 nucleotides9821 and 9822 are separated by 158 nucleotides mRNA_1450: 9818 - K20826 RPAP1 RNA polymerase II-associated protein 1, at 317,721 to 321,691 9818 mRNA_1451: 9819 - K11987 PTGS2, COX2 prostaglandin-endoperoxide synthase 2, at 321,832 to 325,764 9819 mRNA_1452: 9820 - K07241 nixA high-affinity nickel-transport protein, at 326,244 to 328,401 9820 mRNA_1453: 9821 - HMMPfam-G-patch domain-PF01585,ProSiteProfiles-G-patch domain profile.-PS50174,SMART-glycine rich nucleic binding domain-SM00443, at 328,591 to 330,027 9821 mRNA_1454: 9822 - K11390 CLYBL citrate lyase subunit beta-like protein, at 330,186 to 331,593 9822
Group Condition mRNA_1450 mRNA_1451 mRNA_1452 mRNA_1453 mRNA_1454
9818 9819 9820 9821 9822
facs on lipid accumulation Sorted High BODIPY Gate -2.3 +0.1 +0.3 -1.0 -0.6
facs on lipid accumulation Sorted Low BODIPY Gate -1.5 +0.1 -0.4 -0.7 -0.3
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -1.1 -0.3 -0.9 +0.1 +0.1
growth on ricinoleic acid YNB Ricinoleic Acid -0.6 +0.0 +0.2 -0.7 +0.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.6 +0.1 -0.2 -0.0 -0.1
growth on oleic acid YNB Glucose -0.3 -0.1 -0.2 -0.0 -0.1
growth on ypd YPD +0.0 -0.0 -0.0 -0.2 -0.4
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.7 -0.0 -0.1 -0.1 +0.3
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.2 -0.1 -0.3 +0.1 +0.0
facs on lipid accumulation Sorted No BODIPY Gate -0.1 +0.4 +0.3 -0.4 -0.7
auxotrophy YNB Glucose 75mM Methionine -0.8 -0.1 +0.3 -0.4 +0.7
ypd buoyancy 40 hrs No Buoyancy Separation -0.4 -0.3 +0.4 -0.4 +0.4
auxotrophy YNB Glucose 75mM Arginine -0.5 -0.1 -0.1 -0.2 +0.7
ypd buoyancy 40 hrs Median Buoyancy +0.1 -0.2 -0.4 +0.1 +0.3
auxotrophy Dropout Complete -0.7 -0.1 +0.4 -0.1 +0.5
growth on oleic acid YNB Oleic Acid +0.2 +0.0 -0.0 -0.1 +0.1
growth on ricinoleic acid YNB Methylricinoleic Acid +1.0 -0.1 -0.6 -0.1 +0.0
ypd buoyancy 40 hrs Low Buoyancy +0.0 -0.2 -0.1 +0.2 +0.3
growth on ricinoleic acid YNB Glucose +0.8 -0.1 -0.4 -0.0 +0.3
auxotrophy YNB Glucose -0.1 -0.1 +0.3 -0.3 +0.7
ypd buoyancy 40 hrs High Buoyancy -0.1 +0.1 +0.0 +0.5 +0.5
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