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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9819 and 9820 are separated by 479 nucleotides
9820 and 9821 are separated by 189 nucleotides
9821 and 9822 are separated by 158 nucleotides
9822 and 9823 are separated by 192 nucleotides
mRNA_1451: 9819 - K11987 PTGS2, COX2 prostaglandin-endoperoxide synthase 2, at 321,832 to 325,764
9819
mRNA_1452: 9820 - K07241 nixA high-affinity nickel-transport protein, at 326,244 to 328,401
9820
mRNA_1453: 9821 - HMMPfam-G-patch domain-PF01585,ProSiteProfiles-G-patch domain profile.-PS50174,SMART-glycine rich nucleic binding domain-SM00443, at 328,591 to 330,027
9821
mRNA_1454: 9822 - K11390 CLYBL citrate lyase subunit beta-like protein, at 330,186 to 331,593
9822
mRNA_1455: 9823 - BLAST patatin-like phospholipase domain protein [Rhizoctoni..., at 331,786 to 334,001
9823
Group
Condition
mRNA
_1451
mRNA
_1452
mRNA
_1453
mRNA
_1454
mRNA
_1455
9819
9820
9821
9822
9823
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.3
-1.0
-0.6
-0.1
growth on ypd
YPD
-0.0
-0.0
-0.2
-0.4
-0.2
growth on oleic acid
YNB Glucose
-0.1
-0.2
-0.0
-0.1
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.4
-0.7
-0.3
+0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
-0.9
+0.1
+0.1
+0.4
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
+0.4
-0.4
+0.4
-0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.2
-0.0
-0.1
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
+0.3
-0.4
-0.7
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.6
-0.1
+0.0
+0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
+0.2
-0.7
+0.1
+0.2
growth on ricinoleic acid
YNB Glucose
-0.1
-0.4
-0.0
+0.3
+0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.4
+0.1
+0.3
+0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.1
+0.2
+0.3
-0.1
growth on oleic acid
YNB Oleic Acid
+0.0
-0.0
-0.1
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.3
+0.1
+0.0
+0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.3
-0.4
+0.7
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
-0.1
-0.1
+0.3
+0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.1
-0.2
+0.7
+0.1
auxotrophy
Dropout Complete
-0.1
+0.4
-0.1
+0.5
-0.2
auxotrophy
YNB Glucose
-0.1
+0.3
-0.3
+0.7
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.0
+0.5
+0.5
-0.1
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