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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9825 and 9826 are separated by 724 nucleotides
9826 and 9827 are separated by 166 nucleotides
9827 and 9828 are separated by 577 nucleotides
9828 and 9829 are separated by 700 nucleotides
mRNA_1457: 9825 - K00549 metE 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, at 336,305 to 339,274
9825
mRNA_1458: 9826 - K17775 MDM34, MMM2 mitochondrial distribution and morphology protein 34, at 339,999 to 342,727
9826
mRNA_1459: 9827 - HMMPfam-F-box-like-PF12937,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF52047,SUPERFAMILY--SSF81383, at 342,894 to 344,123
9827
mRNA_1460: 9828 - K06911 K06911 uncharacterized protein, at 344,701 to 345,995
9828
mRNA_1461: 9829 - K02503 HINT1, hinT, hit histidine triad (HIT) family protein, at 346,696 to 347,592
9829
Group
Condition
mRNA
_1457
mRNA
_1458
mRNA
_1459
mRNA
_1460
mRNA
_1461
9825
9826
9827
9828
9829
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-2.2
+0.2
-0.1
+0.1
-1.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-2.2
-0.1
-0.1
-0.8
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-2.6
+0.4
-0.3
+0.2
-0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
-1.6
-0.3
-0.0
-0.0
-0.9
facs on lipid accumulation
Sorted No BODIPY Gate
-2.5
-0.4
-0.5
+0.3
+0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
-2.6
-0.9
+0.0
+0.5
+0.4
growth on ricinoleic acid
YNB Glucose
-2.8
-0.3
-0.1
+0.2
+0.6
auxotrophy
YNB Glucose 75mM Arginine
-1.9
+0.1
+0.0
+0.2
-0.6
growth on oleic acid
YNB Glucose
-2.7
+0.2
+0.1
+0.2
-0.0
auxotrophy
YNB Glucose
-2.3
+0.5
-0.0
+0.3
-0.5
growth on oleic acid
YNB Oleic Acid
-2.6
+0.5
-0.1
+0.4
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-1.8
-1.0
+0.5
+0.4
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-2.4
-0.2
+0.1
+0.4
+0.7
growth on ypd
YPD
-0.7
-0.6
-0.1
+0.2
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-2.2
-0.5
-0.1
+0.5
+1.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-0.4
-0.1
+0.2
+0.0
auxotrophy
Dropout Complete
-0.7
+0.3
-0.2
+0.3
-0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.2
-0.0
-0.3
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.3
+0.1
+0.1
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.5
-0.1
-0.0
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.4
-0.1
+0.1
-0.4
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