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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9827 and 9828 are separated by 577 nucleotides
9828 and 9829 are separated by 700 nucleotides
9829 and 9830 are separated by 349 nucleotides
9830 and 9831 are separated by 236 nucleotides
mRNA_1459: 9827 - HMMPfam-F-box-like-PF12937,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF52047,SUPERFAMILY--SSF81383, at 342,894 to 344,123
9827
mRNA_1460: 9828 - K06911 K06911 uncharacterized protein, at 344,701 to 345,995
9828
mRNA_1461: 9829 - K02503 HINT1, hinT, hit histidine triad (HIT) family protein, at 346,696 to 347,592
9829
mRNA_1462: 9830 - K01764 E4.4.1.17 cytochrome c heme-lyase, at 347,942 to 349,022
9830
mRNA_1463: 9831 - K08850 AURKX aurora kinase, other, at 349,259 to 351,388
9831
Group
Condition
mRNA
_1459
mRNA
_1460
mRNA
_1461
mRNA
_1462
mRNA
_1463
9827
9828
9829
9830
9831
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.1
-1.6
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
-0.0
-0.9
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
+0.2
-0.6
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.8
+0.3
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.0
+0.2
-0.6
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.1
-0.4
N.D.
N.D.
auxotrophy
Dropout Complete
-0.2
+0.3
-0.3
N.D.
N.D.
auxotrophy
YNB Glucose
-0.0
+0.3
-0.5
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.3
+0.1
N.D.
N.D.
growth on ypd
YPD
-0.1
+0.2
-0.3
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.0
+0.1
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.1
-0.2
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
+0.2
+0.0
N.D.
N.D.
growth on oleic acid
YNB Glucose
+0.1
+0.2
-0.0
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.5
+0.3
+0.5
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
-0.1
+0.4
+0.1
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
-0.1
+0.2
+0.6
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
+0.5
+0.4
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.4
+0.7
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.5
+0.4
+0.4
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+0.5
+1.3
N.D.
N.D.
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