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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9832 and 9833 are separated by 281 nucleotides
9833 and 9834 are separated by 90 nucleotides
9834 and 9835 are separated by 359 nucleotides
9835 and 9836 are separated by 1727 nucleotides
mRNA_1464: 9832 - BLAST conidiation protein Con-6, putative [Aspergillus ..., at 351,662 to 352,112
9832
mRNA_1465: 9833 - Hypothetical Protein, at 352,394 to 352,564
9833
mRNA_1466: 9834 - BLAST putative catalytic domain thiamin pyrophosphokinase [..., at 352,655 to 354,087
9834
mRNA_1467: 9835 - HMMPfam-Mannosyl oligosaccharide glucosidase-PF03200,SUPERFAMILY--SSF48208, at 354,447 to 358,959
9835
mRNA_1468: 9836 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 360,687 to 364,959
9836
Group
Condition
mRNA
_1464
mRNA
_1465
mRNA
_1466
mRNA
_1467
mRNA
_1468
9832
9833
9834
9835
9836
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
N.D.
-0.1
-3.3
-2.9
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.8
N.D.
+0.1
-1.0
-3.4
ypd buoyancy
40 hrs No Buoyancy Separation
+0.6
N.D.
-1.6
-0.9
-1.2
growth on oleic acid
YNB Oleic Acid
-0.2
N.D.
-0.9
-0.5
-1.4
auxotrophy
Dropout Complete
+0.5
N.D.
-0.5
-0.6
-1.2
auxotrophy
YNB Glucose 75mM Methionine
-0.3
N.D.
-0.4
-0.3
-0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.3
N.D.
-0.2
-0.1
-0.7
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
N.D.
-0.2
-0.6
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
N.D.
+0.2
-0.5
-0.9
auxotrophy
YNB Glucose
-0.1
N.D.
+0.0
-0.2
-0.2
growth on oleic acid
YNB Glucose
-0.5
N.D.
-0.2
+0.0
+0.4
ypd buoyancy
40 hrs Median Buoyancy
+0.3
N.D.
+0.1
-0.1
-0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
N.D.
+0.3
-0.1
-0.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
N.D.
+0.1
+0.1
+0.1
growth on ricinoleic acid
YNB Glucose
+0.5
N.D.
+0.0
+0.0
-0.3
growth on ypd
YPD
-0.0
N.D.
+0.2
-0.2
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.8
N.D.
+0.4
-0.4
-0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.0
N.D.
+0.3
+0.5
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.6
N.D.
+0.7
-0.4
-0.0
ypd buoyancy
40 hrs High Buoyancy
+0.9
N.D.
+0.1
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
N.D.
+0.8
+0.2
-0.0
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