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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9833 and 9834 are separated by 90 nucleotides
9834 and 9835 are separated by 359 nucleotides
9835 and 9836 are separated by 1727 nucleotides
9836 and 9837 are separated by 1489 nucleotides
mRNA_1465: 9833 - Hypothetical Protein, at 352,394 to 352,564
9833
mRNA_1466: 9834 - BLAST putative catalytic domain thiamin pyrophosphokinase [..., at 352,655 to 354,087
9834
mRNA_1467: 9835 - HMMPfam-Mannosyl oligosaccharide glucosidase-PF03200,SUPERFAMILY--SSF48208, at 354,447 to 358,959
9835
mRNA_1468: 9836 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 360,687 to 364,959
9836
mRNA_1469: 9837 - KOG1200 Mitochondrial/plastidial beta-ketoacyl-ACP reductase, at 366,449 to 367,493
9837
Group
Condition
mRNA
_1465
mRNA
_1466
mRNA
_1467
mRNA
_1468
mRNA
_1469
9833
9834
9835
9836
9837
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.1
-3.3
-2.9
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.1
-1.0
-3.4
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-1.6
-0.9
-1.2
N.D.
growth on oleic acid
YNB Oleic Acid
N.D.
-0.9
-0.5
-1.4
N.D.
auxotrophy
Dropout Complete
N.D.
-0.5
-0.6
-1.2
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.2
-0.5
-0.9
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.2
-0.6
-0.4
N.D.
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.4
-0.3
-0.4
N.D.
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.2
-0.1
-0.7
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.3
-0.1
-0.7
N.D.
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.1
-0.1
-0.5
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.4
-0.4
-0.4
N.D.
auxotrophy
YNB Glucose
N.D.
+0.0
-0.2
-0.2
N.D.
growth on ricinoleic acid
YNB Glucose
N.D.
+0.0
+0.0
-0.3
N.D.
growth on oleic acid
YNB Glucose
N.D.
-0.2
+0.0
+0.4
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.1
+0.1
+0.1
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.7
-0.4
-0.0
N.D.
growth on ypd
YPD
N.D.
+0.2
-0.2
+0.4
N.D.
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.1
+0.3
+0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.3
+0.5
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.8
+0.2
-0.0
N.D.
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