Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 9834 and 9835 are separated by 359 nucleotides9835 and 9836 are separated by 1727 nucleotides9836 and 9837 are separated by 1489 nucleotides9837 and 9838 are separated by 707 nucleotides mRNA_1466: 9834 - BLAST putative catalytic domain thiamin pyrophosphokinase [..., at 352,655 to 354,087 9834 mRNA_1467: 9835 - HMMPfam-Mannosyl oligosaccharide glucosidase-PF03200,SUPERFAMILY--SSF48208, at 354,447 to 358,959 9835 mRNA_1468: 9836 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 360,687 to 364,959 9836 mRNA_1469: 9837 - KOG1200 Mitochondrial/plastidial beta-ketoacyl-ACP reductase, at 366,449 to 367,493 9837 mRNA_1470: 9838 - K18592 GGT1_5, CD224 gamma-glutamyltranspeptidase / glutathione hydrolase / leukotriene-C4 hydrolase, at 368,201 to 370,453 9838
Group Condition mRNA_1466 mRNA_1467 mRNA_1468 mRNA_1469 mRNA_1470
9834 9835 9836 9837 9838
growth on ricinoleic acid YNB Ricinoleic Acid -0.1 -3.3 -2.9 N.D. -0.4
growth on ricinoleic acid YNB Methylricinoleic Acid +0.1 -1.0 -3.4 N.D. -0.3
ypd buoyancy 40 hrs No Buoyancy Separation -1.6 -0.9 -1.2 N.D. +0.9
growth on oleic acid YNB Oleic Acid -0.9 -0.5 -1.4 N.D. +0.2
auxotrophy Dropout Complete -0.5 -0.6 -1.2 N.D. +0.1
facs on lipid accumulation Sorted High BODIPY Gate +0.2 -0.5 -0.9 N.D. -0.7
facs on lipid accumulation Sorted No BODIPY Gate -0.2 -0.6 -0.4 N.D. -0.2
auxotrophy YNB Glucose 75mM Methionine -0.4 -0.3 -0.4 N.D. -0.0
auxotrophy YNB Glucose 75mM Arginine -0.2 -0.1 -0.7 N.D. +0.4
auxotrophy YNB Glucose +0.0 -0.2 -0.2 N.D. +0.1
ypd buoyancy 40 hrs Median Buoyancy +0.1 -0.1 -0.5 N.D. +0.2
growth on ricinoleic acid YNB Glucose +0.0 +0.0 -0.3 N.D. +0.0
facs on lipid accumulation Sorted Low BODIPY Gate +0.7 -0.4 -0.0 N.D. -0.5
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.3 -0.1 -0.7 N.D. +0.3
growth on ypd YPD +0.2 -0.2 +0.4 N.D. -0.5
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.4 -0.4 -0.4 N.D. +0.3
growth on oleic acid YNB Glucose -0.2 +0.0 +0.4 N.D. +0.0
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.1 +0.1 +0.1 N.D. +0.1
ypd buoyancy 40 hrs Low Buoyancy +0.3 +0.5 -0.3 N.D. +0.1
ypd buoyancy 40 hrs High Buoyancy +0.1 +0.3 +0.1 N.D. +0.3
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.8 +0.2 -0.0 N.D. +0.5
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