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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9834 and 9835 are separated by 359 nucleotides
9835 and 9836 are separated by 1727 nucleotides
9836 and 9837 are separated by 1489 nucleotides
9837 and 9838 are separated by 707 nucleotides
mRNA_1466: 9834 - BLAST putative catalytic domain thiamin pyrophosphokinase [..., at 352,655 to 354,087
9834
mRNA_1467: 9835 - HMMPfam-Mannosyl oligosaccharide glucosidase-PF03200,SUPERFAMILY--SSF48208, at 354,447 to 358,959
9835
mRNA_1468: 9836 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 360,687 to 364,959
9836
mRNA_1469: 9837 - KOG1200 Mitochondrial/plastidial beta-ketoacyl-ACP reductase, at 366,449 to 367,493
9837
mRNA_1470: 9838 - K18592 GGT1_5, CD224 gamma-glutamyltranspeptidase / glutathione hydrolase / leukotriene-C4 hydrolase, at 368,201 to 370,453
9838
Group
Condition
mRNA
_1466
mRNA
_1467
mRNA
_1468
mRNA
_1469
mRNA
_1470
9834
9835
9836
9837
9838
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-3.3
-2.9
N.D.
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-1.0
-3.4
N.D.
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-1.6
-0.9
-1.2
N.D.
+0.9
growth on oleic acid
YNB Oleic Acid
-0.9
-0.5
-1.4
N.D.
+0.2
auxotrophy
Dropout Complete
-0.5
-0.6
-1.2
N.D.
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.5
-0.9
N.D.
-0.7
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.6
-0.4
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.4
-0.3
-0.4
N.D.
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.1
-0.7
N.D.
+0.4
auxotrophy
YNB Glucose
+0.0
-0.2
-0.2
N.D.
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.1
-0.5
N.D.
+0.2
growth on ricinoleic acid
YNB Glucose
+0.0
+0.0
-0.3
N.D.
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.7
-0.4
-0.0
N.D.
-0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.1
-0.7
N.D.
+0.3
growth on ypd
YPD
+0.2
-0.2
+0.4
N.D.
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
-0.4
-0.4
N.D.
+0.3
growth on oleic acid
YNB Glucose
-0.2
+0.0
+0.4
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.1
+0.1
N.D.
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.3
+0.5
-0.3
N.D.
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.3
+0.1
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.8
+0.2
-0.0
N.D.
+0.5
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