Fitness Browser
Home
Find Gene
BLAST
Experiments
Organisms
Help
Gene
Fitness
Nearby
Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
Add gene:
Go
Number of genes on each side:
1
2
3
4
5
Go
Top 21 experiments (either direction), sorted by average fitness
Or view
all 21 experiments
or
choose conditions
or try the
comparative fitness browser
500 nt
9836 and 9837 are separated by 1489 nucleotides
9837 and 9838 are separated by 707 nucleotides
9838 and 9839 are separated by 253 nucleotides
9839 and 9840 are separated by 475 nucleotides
mRNA_1468: 9836 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 360,687 to 364,959
9836
mRNA_1469: 9837 - KOG1200 Mitochondrial/plastidial beta-ketoacyl-ACP reductase, at 366,449 to 367,493
9837
mRNA_1470: 9838 - K18592 GGT1_5, CD224 gamma-glutamyltranspeptidase / glutathione hydrolase / leukotriene-C4 hydrolase, at 368,201 to 370,453
9838
mRNA_1471: 9839 - K08874 TRRAP transformation/transcription domain-associated protein, at 370,707 to 382,935
9839
mRNA_1472: 9840 - HMMPfam-Zinc finger, C3HC4 type (RING finger)-PF00097,ProSitePatterns-Zinc finger RING-type signature.-PS00518,SMART-Ring finger-SM00184,SUPERFAMILY--SSF57850, at 383,411 to 384,622
9840
Group
Condition
mRNA
_1468
mRNA
_1469
mRNA
_1470
mRNA
_1471
mRNA
_1472
9836
9837
9838
9839
9840
growth on ricinoleic acid
YNB Methylricinoleic Acid
-3.4
N.D.
-0.3
-1.2
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-2.9
N.D.
-0.4
-1.3
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
N.D.
-0.5
-2.6
-0.6
growth on oleic acid
YNB Oleic Acid
-1.4
N.D.
+0.2
-2.4
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-1.2
N.D.
+0.9
-3.1
-0.0
auxotrophy
Dropout Complete
-1.2
N.D.
+0.1
-2.2
+0.1
growth on oleic acid
YNB Glucose
+0.4
N.D.
+0.0
-3.0
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
N.D.
+0.3
-1.7
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.9
N.D.
-0.7
-0.3
+0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.7
N.D.
+0.4
-1.4
+0.1
growth on ricinoleic acid
YNB Glucose
-0.3
N.D.
+0.0
-1.5
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
N.D.
+0.1
-1.0
-0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.7
N.D.
+0.3
-0.9
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
N.D.
-0.2
+0.1
-0.4
ypd buoyancy
40 hrs Median Buoyancy
-0.5
N.D.
+0.2
-0.5
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.1
N.D.
+0.3
-0.5
+0.0
auxotrophy
YNB Glucose
-0.2
N.D.
+0.1
+0.1
-0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.3
N.D.
+0.1
+0.0
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.4
N.D.
-0.0
+0.5
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
N.D.
+0.5
+0.0
-0.1
growth on ypd
YPD
+0.4
N.D.
-0.5
+0.8
+0.4
remove
mRNA_1468
plot
remove
mRNA_1469
plot
remove
mRNA_1470
remove
mRNA_1471
plot
remove
mRNA_1472
plot