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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9837 and 9838 are separated by 707 nucleotides
9838 and 9839 are separated by 253 nucleotides
9839 and 9840 are separated by 475 nucleotides
9840 and 9841 are separated by 463 nucleotides
mRNA_1469: 9837 - KOG1200 Mitochondrial/plastidial beta-ketoacyl-ACP reductase, at 366,449 to 367,493
9837
mRNA_1470: 9838 - K18592 GGT1_5, CD224 gamma-glutamyltranspeptidase / glutathione hydrolase / leukotriene-C4 hydrolase, at 368,201 to 370,453
9838
mRNA_1471: 9839 - K08874 TRRAP transformation/transcription domain-associated protein, at 370,707 to 382,935
9839
mRNA_1472: 9840 - HMMPfam-Zinc finger, C3HC4 type (RING finger)-PF00097,ProSitePatterns-Zinc finger RING-type signature.-PS00518,SMART-Ring finger-SM00184,SUPERFAMILY--SSF57850, at 383,411 to 384,622
9840
mRNA_1473: 9841 - KOG0254 Predicted transporter (major facilitator superfamily), at 385,086 to 387,836
9841
Group
Condition
mRNA
_1469
mRNA
_1470
mRNA
_1471
mRNA
_1472
mRNA
_1473
9837
9838
9839
9840
9841
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.5
-2.6
-0.6
+0.4
growth on oleic acid
YNB Glucose
N.D.
+0.0
-3.0
-0.2
+0.1
auxotrophy
Dropout Complete
N.D.
+0.1
-2.2
+0.1
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.9
-3.1
-0.0
+0.3
growth on oleic acid
YNB Oleic Acid
N.D.
+0.2
-2.4
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.1
-1.0
-0.6
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.3
-1.7
-0.4
-0.0
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.4
-1.4
+0.1
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.4
-1.3
-0.0
+0.8
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.3
-0.9
-0.1
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.7
-0.3
+0.2
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.3
-1.2
+0.1
+0.7
growth on ricinoleic acid
YNB Glucose
N.D.
+0.0
-1.5
+0.3
+0.6
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.3
-0.5
+0.0
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.2
+0.1
-0.4
+0.3
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.2
-0.5
+0.2
+0.1
auxotrophy
YNB Glucose
N.D.
+0.1
+0.1
-0.0
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.5
+0.0
-0.1
-0.3
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.1
+0.0
+0.1
-0.0
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.0
+0.5
+0.2
-0.1
growth on ypd
YPD
N.D.
-0.5
+0.8
+0.4
-0.0
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