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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9839 and 9840 are separated by 475 nucleotides
9840 and 9841 are separated by 463 nucleotides
9841 and 9842 are separated by 614 nucleotides
9842 and 9843 are separated by 478 nucleotides
mRNA_1471: 9839 - K08874 TRRAP transformation/transcription domain-associated protein, at 370,707 to 382,935
9839
mRNA_1472: 9840 - HMMPfam-Zinc finger, C3HC4 type (RING finger)-PF00097,ProSitePatterns-Zinc finger RING-type signature.-PS00518,SMART-Ring finger-SM00184,SUPERFAMILY--SSF57850, at 383,411 to 384,622
9840
mRNA_1473: 9841 - KOG0254 Predicted transporter (major facilitator superfamily), at 385,086 to 387,836
9841
mRNA_1474: 9842 - Hypothetical Protein, at 388,451 to 391,356
9842
mRNA_1475: 9843 - K07374 TUBA tubulin alpha, at 391,835 to 393,525
9843
Group
Condition
mRNA
_1471
mRNA
_1472
mRNA
_1473
mRNA
_1474
mRNA
_1475
9839
9840
9841
9842
9843
growth on oleic acid
YNB Glucose
-3.0
-0.2
+0.1
+0.1
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-2.6
-0.6
+0.4
+0.4
N.D.
growth on oleic acid
YNB Oleic Acid
-2.4
+0.1
+0.2
-0.2
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-3.1
-0.0
+0.3
+0.5
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-1.7
-0.4
-0.0
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-1.0
-0.6
-0.2
-0.1
N.D.
auxotrophy
Dropout Complete
-2.2
+0.1
+0.0
+0.3
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.9
-0.1
-0.2
-0.2
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-1.4
+0.1
-0.0
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
-0.1
-0.3
-0.3
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.3
-0.0
+0.8
+0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.5
+0.0
-0.1
+0.2
N.D.
growth on ricinoleic acid
YNB Glucose
-1.5
+0.3
+0.6
+0.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.2
+0.1
+0.7
-0.0
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.5
+0.2
+0.1
+0.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
+0.2
+0.2
+0.0
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.4
+0.3
+0.2
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.1
-0.0
+0.1
N.D.
auxotrophy
YNB Glucose
+0.1
-0.0
-0.1
+0.2
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.5
+0.2
-0.1
+0.1
N.D.
growth on ypd
YPD
+0.8
+0.4
-0.0
-0.4
N.D.
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