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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9848 and 9849 are separated by 126 nucleotides
9849 and 9850 are separated by 4139 nucleotides
9850 and 9851 are separated by 278 nucleotides
9851 and 9852 are separated by 349 nucleotides
mRNA_1480: 9848 - KOG0254 Predicted transporter (major facilitator superfamily), at 403,503 to 404,169
9848
mRNA_1481: 9849 - Hypothetical Protein, at 404,296 to 404,872
9849
mRNA_1482: 9850 - BLAST zn -c6 transcription factor [Malassezia pachyderm..., at 409,012 to 409,512
9850
mRNA_1483: 9851 - BLAST Protein priB [Grifola frondosa], at 409,791 to 410,399
9851
mRNA_1484: 9852 - HMMPfam-Cation efflux family-PF01545,SUPERFAMILY--SSF161111, at 410,749 to 412,587
9852
Group
Condition
mRNA
_1480
mRNA
_1481
mRNA
_1482
mRNA
_1483
mRNA
_1484
9848
9849
9850
9851
9852
ypd buoyancy
40 hrs Low Buoyancy
-0.7
N.D.
+0.2
-2.7
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-1.1
N.D.
-0.3
-1.3
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
N.D.
+0.2
-2.2
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.6
N.D.
-0.4
-2.4
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.9
N.D.
+0.1
-1.3
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.6
N.D.
-0.2
-1.3
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.4
N.D.
+0.1
-1.0
-0.3
growth on oleic acid
YNB Oleic Acid
+0.4
N.D.
-0.2
-2.0
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
N.D.
-0.2
-1.7
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
N.D.
-0.3
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
N.D.
-0.3
+0.1
-0.0
auxotrophy
YNB Glucose 75mM Arginine
+1.6
N.D.
+0.3
-2.8
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
N.D.
-0.2
+0.0
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+1.1
N.D.
+0.4
-2.3
+0.4
growth on ypd
YPD
-1.2
N.D.
-0.4
+1.1
+0.4
growth on oleic acid
YNB Glucose
-0.3
N.D.
-0.1
-0.1
+0.5
growth on ricinoleic acid
YNB Glucose
+1.1
N.D.
-0.0
-1.3
+0.7
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
N.D.
-0.3
+1.2
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.6
N.D.
+0.0
+0.1
+0.4
auxotrophy
YNB Glucose
+1.4
N.D.
+0.3
-0.3
+0.5
auxotrophy
Dropout Complete
+1.7
N.D.
+0.2
-0.4
+0.8
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