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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9850 and 9851 are separated by 278 nucleotides
9851 and 9852 are separated by 349 nucleotides
9852 and 9853 are separated by 284 nucleotides
9853 and 9854 are separated by 84 nucleotides
mRNA_1482: 9850 - BLAST zn -c6 transcription factor [Malassezia pachyderm..., at 409,012 to 409,512
9850
mRNA_1483: 9851 - BLAST Protein priB [Grifola frondosa], at 409,791 to 410,399
9851
mRNA_1484: 9852 - HMMPfam-Cation efflux family-PF01545,SUPERFAMILY--SSF161111, at 410,749 to 412,587
9852
mRNA_1485: 9853 - HMMPfam-WW domain-PF00397,ProSitePatterns-WW/rsp5/WWP domain signature.-PS01159,ProSiteProfiles-WW/rsp5/WWP domain profile.-PS50020,SMART-Domain with 2 conserved Trp (W) residues-SM00456,SUPERFAMILY--SSF51045, at 412,872 to 413,936
9853
mRNA_1486: 9854 - K11085 msbA ATP-binding cassette, subfamily B, bacterial MsbA, at 414,021 to 419,409
9854
Group
Condition
mRNA
_1482
mRNA
_1483
mRNA
_1484
mRNA
_1485
mRNA
_1486
9850
9851
9852
9853
9854
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-2.2
-0.3
-1.3
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
-2.4
-0.1
-0.3
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-1.3
-0.1
-0.7
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-2.7
+0.2
+0.1
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-1.3
+0.0
-0.1
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.3
-2.8
+0.5
+0.2
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.4
-2.3
+0.4
-0.2
-0.1
growth on oleic acid
YNB Oleic Acid
-0.2
-2.0
+0.3
+0.3
-0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-1.3
-0.1
-0.1
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.1
-1.0
-0.3
-0.2
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-1.7
+0.4
+0.7
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.0
+0.2
-0.5
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
+0.1
-0.0
-0.2
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
-0.1
+0.2
-0.1
-0.0
growth on ricinoleic acid
YNB Glucose
-0.0
-1.3
+0.7
+0.5
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
+1.2
-0.1
-0.8
+0.1
auxotrophy
Dropout Complete
+0.2
-0.4
+0.8
-0.1
-0.2
auxotrophy
YNB Glucose
+0.3
-0.3
+0.5
+0.1
-0.2
growth on oleic acid
YNB Glucose
-0.1
-0.1
+0.5
+0.1
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
+0.1
+0.4
+0.5
-0.0
growth on ypd
YPD
-0.4
+1.1
+0.4
-0.1
+0.1
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