Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 9850 and 9851 are separated by 278 nucleotides9851 and 9852 are separated by 349 nucleotides9852 and 9853 are separated by 284 nucleotides9853 and 9854 are separated by 84 nucleotides mRNA_1482: 9850 - BLAST zn -c6 transcription factor [Malassezia pachyderm..., at 409,012 to 409,512 9850 mRNA_1483: 9851 - BLAST Protein priB [Grifola frondosa], at 409,791 to 410,399 9851 mRNA_1484: 9852 - HMMPfam-Cation efflux family-PF01545,SUPERFAMILY--SSF161111, at 410,749 to 412,587 9852 mRNA_1485: 9853 - HMMPfam-WW domain-PF00397,ProSitePatterns-WW/rsp5/WWP domain signature.-PS01159,ProSiteProfiles-WW/rsp5/WWP domain profile.-PS50020,SMART-Domain with 2 conserved Trp (W) residues-SM00456,SUPERFAMILY--SSF51045, at 412,872 to 413,936 9853 mRNA_1486: 9854 - K11085 msbA ATP-binding cassette, subfamily B, bacterial MsbA, at 414,021 to 419,409 9854
Group Condition mRNA_1482 mRNA_1483 mRNA_1484 mRNA_1485 mRNA_1486
9850 9851 9852 9853 9854
ypd buoyancy 40 hrs No Buoyancy Separation +0.2 -2.2 -0.3 -1.3 -0.1
facs on lipid accumulation Sorted Low BODIPY Gate -0.4 -2.4 -0.1 -0.3 -0.3
facs on lipid accumulation Sorted No BODIPY Gate -0.2 -1.3 -0.1 -0.7 -0.1
ypd buoyancy 40 hrs Low Buoyancy +0.2 -2.7 +0.2 +0.1 -0.1
facs on lipid accumulation Sorted High BODIPY Gate -0.3 -1.3 +0.0 -0.1 -0.2
auxotrophy YNB Glucose 75mM Arginine +0.3 -2.8 +0.5 +0.2 -0.1
auxotrophy YNB Glucose 75mM Methionine +0.4 -2.3 +0.4 -0.2 -0.1
growth on oleic acid YNB Oleic Acid -0.2 -2.0 +0.3 +0.3 -0.0
ypd buoyancy 40 hrs Median Buoyancy +0.1 -1.3 -0.1 -0.1 +0.1
ypd buoyancy 40 hrs High Buoyancy +0.1 -1.0 -0.3 -0.2 +0.1
growth on ricinoleic acid YNB Ricinoleic Acid -0.2 -1.7 +0.4 +0.7 -0.1
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.2 +0.0 +0.2 -0.5 -0.1
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.3 +0.1 -0.0 -0.2 +0.0
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.3 -0.1 +0.2 -0.1 -0.0
growth on ricinoleic acid YNB Glucose -0.0 -1.3 +0.7 +0.5 -0.0
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.3 +1.2 -0.1 -0.8 +0.1
auxotrophy Dropout Complete +0.2 -0.4 +0.8 -0.1 -0.2
auxotrophy YNB Glucose +0.3 -0.3 +0.5 +0.1 -0.2
growth on oleic acid YNB Glucose -0.1 -0.1 +0.5 +0.1 +0.1
growth on ricinoleic acid YNB Methylricinoleic Acid +0.0 +0.1 +0.4 +0.5 -0.0
growth on ypd YPD -0.4 +1.1 +0.4 -0.1 +0.1
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