Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 9854 and 9855 are separated by 641 nucleotides9855 and 9856 are separated by 258 nucleotides9856 and 9857 are separated by 572 nucleotides9857 and 9858 are separated by 416 nucleotides mRNA_1486: 9854 - K11085 msbA ATP-binding cassette, subfamily B, bacterial MsbA, at 414,021 to 419,409 9854 mRNA_1487: 9855 - K01883 CARS, cysS cysteinyl-tRNA synthetase, at 420,051 to 423,071 9855 mRNA_1488: 9856 - K15371 GDH2 glutamate dehydrogenase, at 423,330 to 427,670 9856 mRNA_1489: 9857 - K09022 ridA, tdcF 2-iminobutanoate/2-iminopropanoate deaminase, at 428,243 to 429,095 9857 mRNA_1490: 9858 - ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SUPERFAMILY--SSF57701, at 429,512 to 431,122 9858
Group Condition mRNA_1486 mRNA_1487 mRNA_1488 mRNA_1489 mRNA_1490
9854 9855 9856 9857 9858
ypd buoyancy 40 hrs No Buoyancy Separation -0.1 -1.7 -0.1 -0.5 -0.2
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.0 -0.7 +0.1 -0.7 -0.5
facs on lipid accumulation Sorted High BODIPY Gate -0.2 -0.6 -0.4 -0.9 +0.3
growth on oleic acid YNB Oleic Acid -0.0 +0.1 -0.6 +0.0 -0.6
facs on lipid accumulation Sorted No BODIPY Gate -0.1 +0.4 -0.6 -0.8 +0.2
auxotrophy Dropout Complete -0.2 +0.6 -0.2 -0.3 -0.5
ypd buoyancy 40 hrs Low Buoyancy -0.1 +0.3 -0.0 -0.5 -0.1
auxotrophy YNB Glucose 75mM Methionine -0.1 +0.5 +0.1 -0.3 -0.6
growth on ypd YPD +0.1 -0.2 -0.2 +0.1 -0.3
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.1 -0.0 +0.1 -0.3 -0.1
growth on ricinoleic acid YNB Ricinoleic Acid -0.1 +0.6 -0.2 -0.2 -0.5
growth on oleic acid YNB Glucose +0.1 +0.1 -0.2 -0.3 -0.1
growth on ricinoleic acid YNB Glucose -0.0 -0.1 -0.1 +0.1 -0.2
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.0 +0.3 +0.0 -0.3 -0.3
ypd buoyancy 40 hrs Median Buoyancy +0.1 -0.1 -0.1 -0.3 +0.2
auxotrophy YNB Glucose 75mM Arginine -0.1 +0.8 +0.0 -0.5 -0.4
growth on ricinoleic acid YNB Methylricinoleic Acid -0.0 +0.9 -0.5 -0.2 -0.3
facs on lipid accumulation Sorted Low BODIPY Gate -0.3 +0.1 -0.3 -0.1 +0.7
auxotrophy YNB Glucose -0.2 +0.6 +0.1 -0.1 -0.3
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.1 +0.3 -0.1 +0.3 +0.0
ypd buoyancy 40 hrs High Buoyancy +0.1 +0.4 +0.0 -0.3 +0.4
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