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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9854 and 9855 are separated by 641 nucleotides
9855 and 9856 are separated by 258 nucleotides
9856 and 9857 are separated by 572 nucleotides
9857 and 9858 are separated by 416 nucleotides
mRNA_1486: 9854 - K11085 msbA ATP-binding cassette, subfamily B, bacterial MsbA, at 414,021 to 419,409
9854
mRNA_1487: 9855 - K01883 CARS, cysS cysteinyl-tRNA synthetase, at 420,051 to 423,071
9855
mRNA_1488: 9856 - K15371 GDH2 glutamate dehydrogenase, at 423,330 to 427,670
9856
mRNA_1489: 9857 - K09022 ridA, tdcF 2-iminobutanoate/2-iminopropanoate deaminase, at 428,243 to 429,095
9857
mRNA_1490: 9858 - ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SUPERFAMILY--SSF57701, at 429,512 to 431,122
9858
Group
Condition
mRNA
_1486
mRNA
_1487
mRNA
_1488
mRNA
_1489
mRNA
_1490
9854
9855
9856
9857
9858
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-1.7
-0.1
-0.5
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
-0.7
+0.1
-0.7
-0.5
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.6
-0.4
-0.9
+0.3
growth on oleic acid
YNB Oleic Acid
-0.0
+0.1
-0.6
+0.0
-0.6
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.4
-0.6
-0.8
+0.2
auxotrophy
Dropout Complete
-0.2
+0.6
-0.2
-0.3
-0.5
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.3
-0.0
-0.5
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.5
+0.1
-0.3
-0.6
growth on ypd
YPD
+0.1
-0.2
-0.2
+0.1
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.0
+0.1
-0.3
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+0.6
-0.2
-0.2
-0.5
growth on oleic acid
YNB Glucose
+0.1
+0.1
-0.2
-0.3
-0.1
growth on ricinoleic acid
YNB Glucose
-0.0
-0.1
-0.1
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.3
+0.0
-0.3
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.1
-0.1
-0.3
+0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.8
+0.0
-0.5
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
+0.9
-0.5
-0.2
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
+0.1
-0.3
-0.1
+0.7
auxotrophy
YNB Glucose
-0.2
+0.6
+0.1
-0.1
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.3
-0.1
+0.3
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.4
+0.0
-0.3
+0.4
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