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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9856 and 9857 are separated by 572 nucleotides
9857 and 9858 are separated by 416 nucleotides
9858 and 9859 are separated by 1476 nucleotides
9859 and 9860 are separated by 769 nucleotides
mRNA_1488: 9856 - K15371 GDH2 glutamate dehydrogenase, at 423,330 to 427,670
9856
mRNA_1489: 9857 - K09022 ridA, tdcF 2-iminobutanoate/2-iminopropanoate deaminase, at 428,243 to 429,095
9857
mRNA_1490: 9858 - ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SUPERFAMILY--SSF57701, at 429,512 to 431,122
9858
mRNA_1491: 9859 - K04513 RHOA Ras homolog gene family, member A, at 432,599 to 433,571
9859
mRNA_1492: 9860 - K12855 PRPF6, PRP6 pre-mRNA-processing factor 6, at 434,341 to 437,683
9860
Group
Condition
mRNA
_1488
mRNA
_1489
mRNA
_1490
mRNA
_1491
mRNA
_1492
9856
9857
9858
9859
9860
growth on oleic acid
YNB Oleic Acid
-0.6
+0.0
-0.6
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.6
-0.8
+0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.7
-0.5
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
-0.2
-0.3
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
-0.9
+0.3
N.D.
N.D.
auxotrophy
Dropout Complete
-0.2
-0.3
-0.5
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.2
-0.5
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.3
-0.6
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.0
-0.5
-0.4
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.5
-0.2
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.5
-0.1
N.D.
N.D.
growth on oleic acid
YNB Glucose
-0.2
-0.3
-0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
-0.3
-0.3
N.D.
N.D.
growth on ypd
YPD
-0.2
+0.1
-0.3
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.3
-0.1
N.D.
N.D.
auxotrophy
YNB Glucose
+0.1
-0.1
-0.3
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
-0.1
+0.1
-0.2
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.3
+0.2
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.3
+0.4
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.3
+0.0
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-0.1
+0.7
N.D.
N.D.
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