Fitness Browser
Home
Find Gene
BLAST
Experiments
Organisms
Help
Gene
Fitness
Nearby
Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
Add gene:
Go
Number of genes on each side:
1
2
3
4
5
Go
Top 21 experiments (either direction), sorted by average fitness
Or view
all 21 experiments
or
choose conditions
or try the
comparative fitness browser
500 nt
9857 and 9858 are separated by 416 nucleotides
9858 and 9859 are separated by 1476 nucleotides
9859 and 9860 are separated by 769 nucleotides
9860 and 9861 are separated by 137 nucleotides
mRNA_1489: 9857 - K09022 ridA, tdcF 2-iminobutanoate/2-iminopropanoate deaminase, at 428,243 to 429,095
9857
mRNA_1490: 9858 - ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SUPERFAMILY--SSF57701, at 429,512 to 431,122
9858
mRNA_1491: 9859 - K04513 RHOA Ras homolog gene family, member A, at 432,599 to 433,571
9859
mRNA_1492: 9860 - K12855 PRPF6, PRP6 pre-mRNA-processing factor 6, at 434,341 to 437,683
9860
mRNA_1493: 9861 - KOG1981 SOK1 kinase belonging to the STE20/SPS1/GC kinase family, at 437,821 to 440,939
9861
Group
Condition
mRNA
_1489
mRNA
_1490
mRNA
_1491
mRNA
_1492
mRNA
_1493
9857
9858
9859
9860
9861
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.5
N.D.
N.D.
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.7
-0.5
N.D.
N.D.
+0.0
growth on oleic acid
YNB Oleic Acid
+0.0
-0.6
N.D.
N.D.
-0.5
growth on oleic acid
YNB Glucose
-0.3
-0.1
N.D.
N.D.
-0.6
auxotrophy
YNB Glucose 75mM Methionine
-0.3
-0.6
N.D.
N.D.
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.5
-0.4
N.D.
N.D.
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.3
N.D.
N.D.
-0.2
auxotrophy
Dropout Complete
-0.3
-0.5
N.D.
N.D.
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
-0.2
N.D.
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
-0.3
N.D.
N.D.
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.9
+0.3
N.D.
N.D.
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.5
-0.1
N.D.
N.D.
+0.2
growth on ricinoleic acid
YNB Glucose
+0.1
-0.2
N.D.
N.D.
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.8
+0.2
N.D.
N.D.
+0.4
growth on ypd
YPD
+0.1
-0.3
N.D.
N.D.
+0.1
auxotrophy
YNB Glucose
-0.1
-0.3
N.D.
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
-0.1
N.D.
N.D.
+0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.3
+0.2
N.D.
N.D.
+0.3
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.4
N.D.
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
+0.0
N.D.
N.D.
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.7
N.D.
N.D.
+0.3
remove
mRNA_1489
plot
remove
mRNA_1490
plot
remove
mRNA_1491
remove
mRNA_1492
plot
remove
mRNA_1493
plot