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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9859 and 9860 are separated by 769 nucleotides
9860 and 9861 are separated by 137 nucleotides
9861 and 9862 are separated by 2175 nucleotides
9862 and 9863 are separated by 321 nucleotides
mRNA_1491: 9859 - K04513 RHOA Ras homolog gene family, member A, at 432,599 to 433,571
9859
mRNA_1492: 9860 - K12855 PRPF6, PRP6 pre-mRNA-processing factor 6, at 434,341 to 437,683
9860
mRNA_1493: 9861 - KOG1981 SOK1 kinase belonging to the STE20/SPS1/GC kinase family, at 437,821 to 440,939
9861
mRNA_1494: 9862 - HMMPfam-Haloacid dehalogenase-like hydrolase-PF13419,SUPERFAMILY--SSF56784, at 443,115 to 444,117
9862
mRNA_1495: 9863 - Hypothetical Protein, at 444,439 to 447,391
9863
Group
Condition
mRNA
_1491
mRNA
_1492
mRNA
_1493
mRNA
_1494
mRNA
_1495
9859
9860
9861
9862
9863
growth on oleic acid
YNB Glucose
N.D.
N.D.
-0.6
+0.1
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
+0.4
-0.7
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
+0.1
-1.0
+0.3
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
-0.5
+0.4
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
+0.0
-0.4
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
-0.2
+0.5
-0.5
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
+0.1
-0.3
+0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
-0.0
+0.2
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
-0.5
+0.1
+0.3
auxotrophy
Dropout Complete
N.D.
N.D.
+0.2
+0.1
-0.3
auxotrophy
YNB Glucose
N.D.
N.D.
+0.3
-0.0
-0.2
growth on ypd
YPD
N.D.
N.D.
+0.1
-0.1
+0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
+0.3
+0.4
-0.5
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
-0.2
+0.4
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
+0.3
-0.3
+0.6
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
+0.2
+0.6
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.1
+0.7
-0.0
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
+0.2
+0.8
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.1
+1.3
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
+0.3
+0.6
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
+0.3
+0.6
+0.5
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