Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 9861 and 9862 are separated by 2175 nucleotides9862 and 9863 are separated by 321 nucleotides9863 and 9864 are separated by 525 nucleotides9864 and 9865 are separated by 233 nucleotides mRNA_1493: 9861 - KOG1981 SOK1 kinase belonging to the STE20/SPS1/GC kinase family, at 437,821 to 440,939 9861 mRNA_1494: 9862 - HMMPfam-Haloacid dehalogenase-like hydrolase-PF13419,SUPERFAMILY--SSF56784, at 443,115 to 444,117 9862 mRNA_1495: 9863 - Hypothetical Protein, at 444,439 to 447,391 9863 mRNA_1496: 9864 - HMMPfam-Major Facilitator Superfamily-PF07690,PRINTS-Tetracycline resistance protein TetB signature-PR01036,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 447,917 to 450,188 9864 mRNA_1497: 9865 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 450,422 to 453,504 9865
Group Condition mRNA_1493 mRNA_1494 mRNA_1495 mRNA_1496 mRNA_1497
9861 9862 9863 9864 9865
growth on oleic acid YNB Glucose -0.6 +0.1 -0.3 +0.2 +0.0
growth on ricinoleic acid YNB Methylricinoleic Acid -0.2 +0.5 -0.5 -0.1 -0.3
facs on lipid accumulation Sorted No BODIPY Gate +0.4 -0.7 -0.3 +0.2 +0.1
auxotrophy YNB Glucose 75mM Methionine -0.0 +0.2 -0.3 +0.1 -0.2
auxotrophy YNB Glucose 75mM Arginine +0.1 -0.3 +0.1 +0.2 -0.2
growth on ricinoleic acid YNB Ricinoleic Acid -0.5 +0.1 +0.3 -0.3 +0.1
growth on ricinoleic acid YNB Glucose -0.2 +0.4 +0.1 -0.4 -0.1
growth on oleic acid YNB Oleic Acid -0.5 +0.4 -0.3 +0.1 +0.2
auxotrophy Dropout Complete +0.2 +0.1 -0.3 +0.2 +0.0
auxotrophy YNB Glucose +0.3 -0.0 -0.2 +0.2 -0.1
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.0 -0.4 +0.1 +0.1 +0.4
ypd buoyancy 40 hrs Median Buoyancy +0.3 +0.4 -0.5 +0.2 +0.0
facs on lipid accumulation Sorted High BODIPY Gate +0.1 -1.0 +0.3 +0.6 +0.5
growth on ypd YPD +0.1 -0.1 +0.1 +0.3 +0.3
ypd buoyancy 40 hrs Low Buoyancy +0.2 +0.6 -0.0 +0.0 -0.1
ypd buoyancy 40 hrs No Buoyancy Separation +0.1 +1.3 -0.1 -0.9 +0.6
facs on lipid accumulation Sorted Low BODIPY Gate +0.3 -0.3 +0.6 +0.6 -0.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.3 +0.6 +0.3 -0.0 +0.0
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.1 +0.7 -0.0 +0.3 +0.4
ypd buoyancy 40 hrs High Buoyancy +0.2 +0.8 -0.2 +0.5 +0.2
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.3 +0.6 +0.5 -0.3 +0.6
remove
mRNA_1493
plot
remove
mRNA_1494
plot
remove
mRNA_1495
remove
mRNA_1496
plot
remove
mRNA_1497
plot