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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9861 and 9862 are separated by 2175 nucleotides
9862 and 9863 are separated by 321 nucleotides
9863 and 9864 are separated by 525 nucleotides
9864 and 9865 are separated by 233 nucleotides
mRNA_1493: 9861 - KOG1981 SOK1 kinase belonging to the STE20/SPS1/GC kinase family, at 437,821 to 440,939
9861
mRNA_1494: 9862 - HMMPfam-Haloacid dehalogenase-like hydrolase-PF13419,SUPERFAMILY--SSF56784, at 443,115 to 444,117
9862
mRNA_1495: 9863 - Hypothetical Protein, at 444,439 to 447,391
9863
mRNA_1496: 9864 - HMMPfam-Major Facilitator Superfamily-PF07690,PRINTS-Tetracycline resistance protein TetB signature-PR01036,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 447,917 to 450,188
9864
mRNA_1497: 9865 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 450,422 to 453,504
9865
Group
Condition
mRNA
_1493
mRNA
_1494
mRNA
_1495
mRNA
_1496
mRNA
_1497
9861
9862
9863
9864
9865
growth on oleic acid
YNB Glucose
-0.6
+0.1
-0.3
+0.2
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
+0.5
-0.5
-0.1
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
-0.7
-0.3
+0.2
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.2
-0.3
+0.1
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.3
+0.1
+0.2
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
+0.1
+0.3
-0.3
+0.1
growth on ricinoleic acid
YNB Glucose
-0.2
+0.4
+0.1
-0.4
-0.1
growth on oleic acid
YNB Oleic Acid
-0.5
+0.4
-0.3
+0.1
+0.2
auxotrophy
Dropout Complete
+0.2
+0.1
-0.3
+0.2
+0.0
auxotrophy
YNB Glucose
+0.3
-0.0
-0.2
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
-0.4
+0.1
+0.1
+0.4
ypd buoyancy
40 hrs Median Buoyancy
+0.3
+0.4
-0.5
+0.2
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-1.0
+0.3
+0.6
+0.5
growth on ypd
YPD
+0.1
-0.1
+0.1
+0.3
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.6
-0.0
+0.0
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+1.3
-0.1
-0.9
+0.6
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
-0.3
+0.6
+0.6
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
+0.6
+0.3
-0.0
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.7
-0.0
+0.3
+0.4
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.8
-0.2
+0.5
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.6
+0.5
-0.3
+0.6
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