Fitness Browser
Home
Find Gene
BLAST
Experiments
Organisms
Help
Gene
Fitness
Nearby
Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
Add gene:
Go
Number of genes on each side:
1
2
3
4
5
Go
Top 21 experiments (either direction), sorted by average fitness
Or view
all 21 experiments
or
choose conditions
or try the
comparative fitness browser
500 nt
9862 and 9863 are separated by 321 nucleotides
9863 and 9864 are separated by 525 nucleotides
9864 and 9865 are separated by 233 nucleotides
9865 and 9866 are separated by 617 nucleotides
mRNA_1494: 9862 - HMMPfam-Haloacid dehalogenase-like hydrolase-PF13419,SUPERFAMILY--SSF56784, at 443,115 to 444,117
9862
mRNA_1495: 9863 - Hypothetical Protein, at 444,439 to 447,391
9863
mRNA_1496: 9864 - HMMPfam-Major Facilitator Superfamily-PF07690,PRINTS-Tetracycline resistance protein TetB signature-PR01036,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 447,917 to 450,188
9864
mRNA_1497: 9865 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 450,422 to 453,504
9865
mRNA_1498: 9866 - K11129 NHP2, NOLA2 H/ACA ribonucleoprotein complex subunit 2, at 454,122 to 455,195
9866
Group
Condition
mRNA
_1494
mRNA
_1495
mRNA
_1496
mRNA
_1497
mRNA
_1498
9862
9863
9864
9865
9866
facs on lipid accumulation
Sorted No BODIPY Gate
-0.7
-0.3
+0.2
+0.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.5
-0.5
-0.1
-0.3
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.1
+0.2
-0.2
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.3
+0.1
-0.2
N.D.
auxotrophy
YNB Glucose
-0.0
-0.2
+0.2
-0.1
N.D.
auxotrophy
Dropout Complete
+0.1
-0.3
+0.2
+0.0
N.D.
growth on ricinoleic acid
YNB Glucose
+0.4
+0.1
-0.4
-0.1
N.D.
growth on oleic acid
YNB Glucose
+0.1
-0.3
+0.2
+0.0
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.4
-0.5
+0.2
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
+0.1
+0.1
+0.4
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.3
-0.3
+0.1
N.D.
growth on oleic acid
YNB Oleic Acid
+0.4
-0.3
+0.1
+0.2
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-1.0
+0.3
+0.6
+0.5
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.6
-0.0
+0.0
-0.1
N.D.
growth on ypd
YPD
-0.1
+0.1
+0.3
+0.3
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
+0.6
+0.6
-0.1
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+1.3
-0.1
-0.9
+0.6
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.6
+0.3
-0.0
+0.0
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.8
-0.2
+0.5
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.6
+0.5
-0.3
+0.6
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.7
-0.0
+0.3
+0.4
N.D.
remove
mRNA_1494
plot
remove
mRNA_1495
plot
remove
mRNA_1496
remove
mRNA_1497
plot
remove
mRNA_1498
plot