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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9863 and 9864 are separated by 525 nucleotides
9864 and 9865 are separated by 233 nucleotides
9865 and 9866 are separated by 617 nucleotides
9866 and 9867 are separated by 468 nucleotides
mRNA_1495: 9863 - Hypothetical Protein, at 444,439 to 447,391
9863
mRNA_1496: 9864 - HMMPfam-Major Facilitator Superfamily-PF07690,PRINTS-Tetracycline resistance protein TetB signature-PR01036,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 447,917 to 450,188
9864
mRNA_1497: 9865 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 450,422 to 453,504
9865
mRNA_1498: 9866 - K11129 NHP2, NOLA2 H/ACA ribonucleoprotein complex subunit 2, at 454,122 to 455,195
9866
mRNA_1499: 9867 - KOG1231 Proteins containing the FAD binding domain, at 455,664 to 457,570
9867
Group
Condition
mRNA
_1495
mRNA
_1496
mRNA
_1497
mRNA
_1498
mRNA
_1499
9863
9864
9865
9866
9867
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
-0.1
-0.3
N.D.
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.9
+0.6
N.D.
-0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.3
+0.1
-0.2
N.D.
-0.2
growth on ricinoleic acid
YNB Glucose
+0.1
-0.4
-0.1
N.D.
-0.2
auxotrophy
Dropout Complete
-0.3
+0.2
+0.0
N.D.
-0.2
auxotrophy
YNB Glucose
-0.2
+0.2
-0.1
N.D.
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.5
+0.2
+0.0
N.D.
+0.1
growth on oleic acid
YNB Oleic Acid
-0.3
+0.1
+0.2
N.D.
-0.1
growth on oleic acid
YNB Glucose
-0.3
+0.2
+0.0
N.D.
+0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.0
-0.1
N.D.
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
+0.2
+0.1
N.D.
-0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.2
-0.2
N.D.
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
-0.3
+0.1
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.1
+0.4
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
-0.0
+0.0
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.3
+0.4
N.D.
+0.0
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.5
+0.2
N.D.
+0.2
growth on ypd
YPD
+0.1
+0.3
+0.3
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
-0.3
+0.6
N.D.
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.6
+0.6
-0.1
N.D.
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
+0.6
+0.5
N.D.
+0.3
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