Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 9864 and 9865 are separated by 233 nucleotides9865 and 9866 are separated by 617 nucleotides9866 and 9867 are separated by 468 nucleotides9867 and 9868 are separated by 699 nucleotides mRNA_1496: 9864 - HMMPfam-Major Facilitator Superfamily-PF07690,PRINTS-Tetracycline resistance protein TetB signature-PR01036,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 447,917 to 450,188 9864 mRNA_1497: 9865 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 450,422 to 453,504 9865 mRNA_1498: 9866 - K11129 NHP2, NOLA2 H/ACA ribonucleoprotein complex subunit 2, at 454,122 to 455,195 9866 mRNA_1499: 9867 - KOG1231 Proteins containing the FAD binding domain, at 455,664 to 457,570 9867 mRNA_1500: 9868 - K05770 TSPO, BZRP benzodiazapine receptor, at 458,270 to 459,039 9868
Group Condition mRNA_1496 mRNA_1497 mRNA_1498 mRNA_1499 mRNA_1500
9864 9865 9866 9867 9868
facs on lipid accumulation Sorted Low BODIPY Gate +0.6 -0.1 N.D. +0.3 -2.5
ypd buoyancy 40 hrs No Buoyancy Separation -0.9 +0.6 N.D. -0.4 +0.3
growth on ricinoleic acid YNB Glucose -0.4 -0.1 N.D. -0.2 +0.3
growth on oleic acid YNB Oleic Acid +0.1 +0.2 N.D. -0.1 -0.6
growth on ricinoleic acid YNB Methylricinoleic Acid -0.1 -0.3 N.D. -0.3 +0.5
auxotrophy YNB Glucose 75mM Methionine +0.1 -0.2 N.D. -0.2 +0.4
ypd buoyancy 40 hrs Low Buoyancy +0.0 -0.1 N.D. -0.0 +0.1
facs on lipid accumulation Sorted No BODIPY Gate +0.2 +0.1 N.D. -0.0 -0.2
growth on ricinoleic acid YNB Ricinoleic Acid -0.3 +0.1 N.D. +0.1 +0.2
auxotrophy YNB Glucose +0.2 -0.1 N.D. -0.2 +0.4
growth on oleic acid YNB Glucose +0.2 +0.0 N.D. +0.0 +0.2
auxotrophy Dropout Complete +0.2 +0.0 N.D. -0.2 +0.5
ypd buoyancy 40 hrs High Buoyancy +0.5 +0.2 N.D. +0.2 -0.4
auxotrophy YNB Glucose 75mM Arginine +0.2 -0.2 N.D. -0.1 +0.6
ypd buoyancy 40 hrs Median Buoyancy +0.2 +0.0 N.D. +0.1 +0.2
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.3 +0.4 N.D. +0.0 +0.0
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.1 +0.4 N.D. -0.2 +0.6
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.3 +0.6 N.D. +0.1 +0.7
facs on lipid accumulation Sorted High BODIPY Gate +0.6 +0.5 N.D. +0.3 -0.3
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.0 +0.0 N.D. +0.1 +1.0
growth on ypd YPD +0.3 +0.3 N.D. +0.0 +1.0
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