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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9864 and 9865 are separated by 233 nucleotides
9865 and 9866 are separated by 617 nucleotides
9866 and 9867 are separated by 468 nucleotides
9867 and 9868 are separated by 699 nucleotides
mRNA_1496: 9864 - HMMPfam-Major Facilitator Superfamily-PF07690,PRINTS-Tetracycline resistance protein TetB signature-PR01036,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 447,917 to 450,188
9864
mRNA_1497: 9865 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 450,422 to 453,504
9865
mRNA_1498: 9866 - K11129 NHP2, NOLA2 H/ACA ribonucleoprotein complex subunit 2, at 454,122 to 455,195
9866
mRNA_1499: 9867 - KOG1231 Proteins containing the FAD binding domain, at 455,664 to 457,570
9867
mRNA_1500: 9868 - K05770 TSPO, BZRP benzodiazapine receptor, at 458,270 to 459,039
9868
Group
Condition
mRNA
_1496
mRNA
_1497
mRNA
_1498
mRNA
_1499
mRNA
_1500
9864
9865
9866
9867
9868
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.6
-0.1
N.D.
+0.3
-2.5
ypd buoyancy
40 hrs No Buoyancy Separation
-0.9
+0.6
N.D.
-0.4
+0.3
growth on ricinoleic acid
YNB Glucose
-0.4
-0.1
N.D.
-0.2
+0.3
growth on oleic acid
YNB Oleic Acid
+0.1
+0.2
N.D.
-0.1
-0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.3
N.D.
-0.3
+0.5
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.2
N.D.
-0.2
+0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.1
N.D.
-0.0
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.1
N.D.
-0.0
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
+0.1
N.D.
+0.1
+0.2
auxotrophy
YNB Glucose
+0.2
-0.1
N.D.
-0.2
+0.4
growth on oleic acid
YNB Glucose
+0.2
+0.0
N.D.
+0.0
+0.2
auxotrophy
Dropout Complete
+0.2
+0.0
N.D.
-0.2
+0.5
ypd buoyancy
40 hrs High Buoyancy
+0.5
+0.2
N.D.
+0.2
-0.4
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.2
N.D.
-0.1
+0.6
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.0
N.D.
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
+0.4
N.D.
+0.0
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.4
N.D.
-0.2
+0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
+0.6
N.D.
+0.1
+0.7
facs on lipid accumulation
Sorted High BODIPY Gate
+0.6
+0.5
N.D.
+0.3
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
+0.0
N.D.
+0.1
+1.0
growth on ypd
YPD
+0.3
+0.3
N.D.
+0.0
+1.0
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