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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9868 and 9869 are separated by 231 nucleotides
9869 and 9870 are separated by 603 nucleotides
9870 and 9871 are separated by 359 nucleotides
9871 and 9872 are separated by 164 nucleotides
mRNA_1500: 9868 - K05770 TSPO, BZRP benzodiazapine receptor, at 458,270 to 459,039
9868
mRNA_1501: 9869 - Hypothetical Protein, at 459,271 to 459,744
9869
mRNA_1502: 9870 - HMMPfam-Fungal specific transcription factor domain-PF04082,SUPERFAMILY--SSF57701, at 460,348 to 464,473
9870
mRNA_1503: 9871 - Hypothetical Protein, at 464,833 to 466,128
9871
mRNA_1504: 9872 - K11251 H2A histone H2A, at 466,293 to 467,391
9872
Group
Condition
mRNA
_1500
mRNA
_1501
mRNA
_1502
mRNA
_1503
mRNA
_1504
9868
9869
9870
9871
9872
facs on lipid accumulation
Sorted Low BODIPY Gate
-2.5
-0.2
-0.0
-0.5
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.4
-0.1
-0.2
-1.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-0.1
-0.2
-0.4
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.4
+0.0
-0.3
N.D.
growth on oleic acid
YNB Oleic Acid
-0.6
-0.1
-0.2
-0.0
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.1
+0.1
-0.9
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.2
-0.0
-0.6
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+1.0
-0.1
-0.1
-1.3
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.6
+0.1
-0.3
-0.8
N.D.
growth on oleic acid
YNB Glucose
+0.2
-0.1
-0.3
-0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.4
+0.2
-0.0
-0.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.5
-0.2
-0.0
-0.6
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
-0.1
-0.1
-0.1
N.D.
growth on ricinoleic acid
YNB Glucose
+0.3
+0.0
-0.1
-0.5
N.D.
auxotrophy
YNB Glucose
+0.4
+0.1
-0.0
-0.7
N.D.
auxotrophy
Dropout Complete
+0.5
-0.0
-0.2
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.7
-0.1
-0.1
-0.4
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.1
-0.1
-0.2
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
+0.2
+0.2
-0.4
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.6
-0.0
-0.2
+0.2
N.D.
growth on ypd
YPD
+1.0
-0.1
-0.0
+0.6
N.D.
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