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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9872 and 9873 are separated by 74 nucleotides
9873 and 9874 are separated by 485 nucleotides
9874 and 9875 are separated by 652 nucleotides
9875 and 9876 are separated by 359 nucleotides
mRNA_1504: 9872 - K11251 H2A histone H2A, at 466,293 to 467,391
9872
mRNA_1505: 9873 - Hypothetical Protein, at 467,466 to 468,083
9873
mRNA_1506: 9874 - Hypothetical Protein, at 468,569 to 469,292
9874
mRNA_1507: 9875 - HMMPfam-Cupin domain-PF07883,SUPERFAMILY--SSF51182, at 469,945 to 470,941
9875
mRNA_1508: 9876 - KOG3140 Predicted membrane protein, at 471,301 to 473,619
9876
Group
Condition
mRNA
_1504
mRNA
_1505
mRNA
_1506
mRNA
_1507
mRNA
_1508
9872
9873
9874
9875
9876
growth on ypd
YPD
N.D.
-0.3
N.D.
-0.1
-1.3
growth on oleic acid
YNB Oleic Acid
N.D.
-0.5
N.D.
-0.2
-0.4
growth on oleic acid
YNB Glucose
N.D.
-0.1
N.D.
-0.3
-0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.2
N.D.
-0.2
-0.2
auxotrophy
Dropout Complete
N.D.
-0.3
N.D.
-0.4
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.2
N.D.
+0.1
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.2
N.D.
-0.4
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.2
N.D.
+0.0
-0.6
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.0
N.D.
+0.0
-0.3
auxotrophy
YNB Glucose
N.D.
-0.4
N.D.
-0.4
+0.5
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.2
N.D.
-0.4
+0.4
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.4
N.D.
-0.4
+0.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.5
N.D.
-0.1
+0.6
growth on ricinoleic acid
YNB Glucose
N.D.
-0.0
N.D.
-0.3
+0.4
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.1
N.D.
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.1
N.D.
-0.5
+0.9
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.2
N.D.
+0.0
+0.6
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.0
N.D.
+0.2
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.1
N.D.
-0.0
+0.9
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.3
N.D.
+0.3
+0.9
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.0
N.D.
+0.4
+0.5
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